We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LAMTOR4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • LAMTOR4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:207.2 nTPM
HPA:207.2 nTPM
GTEx:218.2 nTPM
FANTOM5:42.7 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:58.7 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 207.2
Sample id Sample description nTPM
Amygdala
nTPM: 207.2
2514 Male, age 75, right hemisphere 210.6
2695 Female, age 67, right hemisphere 210.4
2814 Male, age 76, right hemisphere 209.4
2517 Female, age 94, left hemisphere 203.6
1987 Female, age 91, left hemisphere 202.1
Basal amygdala
nTPM: 201.7
2609 Male, age 75, right hemisphere 207.5
1955 Male, age 76, both hemispheres 203.3
2685 Female, age 94, left hemisphere 203.0
2110 Male, age 80, left hemisphere 201.3
2827 Female, age 67, right hemisphere 197.5
2243 Female, age 91, right hemisphere 197.3
Central amygdala
nTPM: 206.4
2826 Female, age 94, left hemisphere 214.8
1905 Male, age 76, both hemispheres 211.0
2515 Male, age 75, right hemisphere 206.6
2701 Female, age 91, right hemisphere 202.2
2239 Male, age 80, left hemisphere 197.5
Corticomedial amygdala
nTPM: 199.8
2428 Male, age 75, right hemisphere 210.3
2829 Male, age 80, left hemisphere 202.6
2429 Female, age 94, left hemisphere 197.5
2242 Female, age 91, right hemisphere 197.3
2240 Male, age 76, both hemispheres 195.7
2535 Female, age 67, right hemisphere 195.5
Lateral amygdala
nTPM: 203.7
2516 Male, age 75, right hemisphere 211.2
2534 Female, age 94, left hemisphere 208.0
1883 Male, age 76, both hemispheres 206.2
2830 Female, age 67, right hemisphere 201.1
2256 Male, age 80, left hemisphere 198.0
2255 Female, age 91, right hemisphere 197.8
Stria terminalis, bed nucleus
nTPM: 198.6
1974 Female, age 91, both hemispheres 203.1
2201 Male, age 74, unknown 198.5
2486 Female, age 94, both hemispheres 194.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 218.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 218.2
Samples: 152

Max nTPM: 742.5
Min nTPM: 104.3
Std nTPM: 84.2
Median nTPM: 197.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 742.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 571.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 520.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 507.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 478.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 405.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 405.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 386.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 381.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 330.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 327.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 319.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 313.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 292.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 279.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 278.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 275.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 274.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 267.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 267.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 266.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 264.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 263.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 259.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 259.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 258.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 255.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 254.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 253.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 252.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 251.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 248.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 248.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 247.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 245.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 245.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 241.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 235.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 234.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 234.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 230.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 230.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 230.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 228.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 227.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 225.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 223.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 220.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 220.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 219.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 217.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 216.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 214.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 214.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 213.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 211.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 211.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 209.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 208.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 208.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 206.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 206.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 205.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 205.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 205.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 204.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 204.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 204.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 202.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 202.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 202.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 198.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 198.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 198.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 198.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 197.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 197.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 196.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 196.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 195.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 195.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 195.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 194.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 194.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 194.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 192.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 191.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 191.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 191.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 191.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 189.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 188.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 188.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 188.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 187.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 187.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 186.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 184.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 183.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 183.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 183.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 183.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 182.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 180.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 179.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 178.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 177.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 175.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 173.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 171.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 170.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 169.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 169.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 168.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 168.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 167.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 166.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 165.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 164.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 163.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 162.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 161.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 160.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 160.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 158.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 154.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 154.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 153.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 153.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 153.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 153.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 152.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 151.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 151.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 149.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 149.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 149.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 148.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 143.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 142.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 141.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 133.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 127.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 117.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 104.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 42.7
FF:10151-102I7 76 years, female 42.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.0
Pig sample Sample description nTPM
Amygdala
nTPM: 64.0
Samples: 4

Max nTPM: 92.6
Min nTPM: 45.9
Sample A Female 92.6
Sample B Female 62.5
Sample C Male 54.9
Sample D Male 45.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.7
Samples: 4

Max nTPM: 67.5
Min nTPM: 50.5
Sample A Male 50.5
Sample B Male 60.1
Sample C Female 67.5
Sample D Female 56.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
69352814 Antisense, RP_050412_01_B11, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.