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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:217.6 nTPM
HPA:217.6 nTPM
GTEx:233.1 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:119.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 217.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 213.2
1981 Female, age 72, midline 224.5
2194 Female, age 79, both hemispheres 217.2
2048 Male, age 55, midline 208.7
2816 Male, age 47, midline 208.4
2565 Male, age 75, midline 207.1
Cervical spinal cord, dorsal horn
nTPM: 211.1
2173 Female, age 72, unknown 228.7
2296 Male, age 66, both hemispheres 216.5
2069 Male, age 47, both hemispheres 214.6
1877 Male, age 55, unknown 212.7
2297 Male, age 75, both hemispheres 198.0
2721 Male, age 90, both hemispheres 196.0
Cervical spinal cord, ventral horn
nTPM: 217.6
2098 Female, age 72, unknown 231.8
2809 Male, age 90, both hemispheres 223.6
2068 Male, age 55, unknown 216.6
2295 Male, age 66, both hemispheres 214.1
2480 Male, age 75, both hemispheres 211.0
2820 Female, age 79, both hemispheres 208.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 233.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 233.1
Samples: 159

Max nTPM: 411.2
Min nTPM: 113.3
Std nTPM: 54.1
Median nTPM: 226.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 411.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 409.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 395.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 392.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 389.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 387.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 360.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 350.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 338.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 332.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 320.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 312.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 300.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 300.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 300.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 299.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 292.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 291.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 285.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 285.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 282.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 280.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 280.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 278.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 278.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 272.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 271.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 270.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 269.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 269.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 268.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 268.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 268.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 268.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 266.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 266.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 261.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 259.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 258.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 257.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 256.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 256.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 255.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 255.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 255.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 253.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 252.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 251.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 249.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 249.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 248.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 246.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 245.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 243.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 242.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 241.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 240.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 240.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 240.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 239.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 238.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 238.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 238.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 238.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 237.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 237.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 237.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 237.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 234.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 232.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 232.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 232.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 231.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 231.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 231.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 230.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 230.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 230.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 227.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 226.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 225.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 224.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 223.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 222.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 221.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 221.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 221.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 220.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 220.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 220.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 219.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 219.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 218.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 218.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 218.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 218.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 217.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 217.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 216.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 214.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 213.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 212.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 212.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 212.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 212.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 211.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 208.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 208.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 208.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 207.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 207.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 206.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 203.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 202.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 202.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 201.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 201.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 201.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 200.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 195.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 195.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 194.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 193.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 192.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 191.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 190.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 190.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 189.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 189.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 184.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 184.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 182.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 182.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 180.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 179.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 177.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 176.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 176.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 174.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 173.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 173.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 171.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 171.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 168.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 167.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 165.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 159.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 158.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 158.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 153.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 151.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 144.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 142.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 142.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 138.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 113.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 62.3
FF:10181-103D1 60 years, female 81.1
FF:10159-103A6 76 years, female 43.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 119.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.6
Samples: 4

Max nTPM: 123.8
Min nTPM: 89.4
Sample A Female 92.7
Sample B Female 96.6
Sample C Male 123.8
Sample D Male 89.4
Ventral spinal cord
nTPM: 119.4
Samples: 4

Max nTPM: 135.9
Min nTPM: 101.1
Sample A Female 101.1
Sample B Female 128.9
Sample C Male 135.9
Sample D Male 111.6

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