MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:211.3 nTPM
HPA:211.3 nTPM
GTEx:247.1 nTPM
FANTOM5:73.2 Scaled Tags Per Million
Pig:101.4 nTPM
Mouse:51.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 211.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.0
2828 Female, age 72, unknown 210.6
1870 Female, age 42, unknown 209.7
2586 Male, age 75, left hemisphere 209.5
2411 Female, age 72, unknown 209.3
2019 Male, age 18, unknown 206.5
1827 Male, age 72, unknown 205.8
2219 Male, age 76, both hemispheres 203.4
1833 Male, age 53, unknown 203.1
2666 Male, age 74, left hemisphere 201.2
1830 Male, age 51, unknown 200.8
Dorsal raphe nucleus
nTPM: 207.2
2298 Female, age 72, unknown 214.1
2047 Male, age 72, unknown 207.6
2750 Male, age 76, both hemispheres 205.1
2016 Female, age 72, unknown 204.8
1828 Male, age 53, unknown 204.1
Inferior colliculus
nTPM: 204.8
2097 Female, age 72, unknown 212.4
1890 Male, age 53, unknown 207.4
1848 Female, age 42, unknown 200.3
2849 Male, age 72, unknown 199.1
Median raphe nucleus
nTPM: 204.2
2220 Male, age 76, midline 204.2
Pedunculopontine tegmental nucleus
nTPM: 206.2
2338 Male, age 61, both hemispheres 208.4
2334 Male, age 80, both hemispheres 205.7
1921 Female, age 85, both hemispheres 204.5
Periaquaductal grey, anterior
nTPM: 205.0
1795 Male, age 51, unknown 205.4
2502 Female, age 75, unknown 205.0
1947 Male, age 18, unknown 204.7
Periaquaductal grey, dorsal
nTPM: 200.9
1840 Male, age 53, unknown 204.6
2464 Female, age 72, unknown 200.6
1831 Male, age 72, unknown 200.1
2850 Male, age 76, both hemispheres 198.4
Periaquaductal grey, lateral
nTPM: 201.2
2053 Male, age 18, unknown 204.0
2140 Male, age 76, both hemispheres 200.2
2272 Male, age 74, both hemispheres 199.4
Pretectal area
nTPM: 205.7
2007 Male, age 72, unknown 211.0
2667 Female, age 75, unknown 208.6
1816 Male, age 51, unknown 208.0
1817 Female, age 42, unknown 206.7
2407 Male, age 75, both hemispheres 205.6
1944 Female, age 72, unknown 205.3
2316 Male, age 76, right hemisphere 205.2
2273 Male, age 74, both hemispheres 203.6
2224 Female, age 72, unknown 203.5
1815 Male, age 53, unknown 203.3
2825 Male, age 18, unknown 202.4
Red nucleus
nTPM: 211.3
2503 Female, age 72, unknown 217.5
1821 Female, age 72, unknown 216.9
1904 Male, age 53, unknown 214.1
1954 Female, age 42, unknown 213.2
2769 Male, age 72, unknown 212.2
1865 Male, age 51, unknown 211.7
2227 Male, age 72, unknown 211.0
2725 Female, age 75, unknown 210.6
2785 Male, age 18, unknown 209.5
2823 Male, age 76, right hemisphere 208.8
2588 Male, age 74, left hemisphere 208.5
2584 Male, age 75, left hemisphere 201.3
Substantia nigra
nTPM: 207.1
1916 Female, age 42, unknown 217.1
1851 Male, age 51, unknown 215.0
2665 Male, age 74, both hemispheres 207.9
1889 Female, age 72, unknown 206.8
2699 Male, age 18, unknown 206.7
2241 Male, age 72, unknown 206.0
2583 Male, age 75, right hemisphere 205.9
1941 Male, age 53, unknown 203.9
2590 Female, age 75, unknown 203.6
2409 Female, age 72, unknown 198.4
Superior colliculus
nTPM: 206.1
1796 Male, age 53, unknown 209.1
2261 Male, age 18, unknown 207.6
1995 Male, age 72, unknown 207.3
2668 Female, age 75, unknown 206.9
2587 Male, age 74, left hemisphere 206.8
1913 Female, age 42, unknown 206.5
1895 Male, age 76, right hemisphere 206.2
2664 Male, age 75, both hemispheres 205.2
2087 Female, age 72, unknown 204.5
1839 Male, age 51, unknown 201.1
Ventral tegmental area
nTPM: 208.5
1915 Female, age 42, unknown 216.6
2410 Female, age 72, unknown 209.9
1942 Male, age 51, unknown 208.5
2021 Male, age 53, unknown 206.8
2223 Female, age 72, unknown 205.1
2218 Male, age 76, both hemispheres 204.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 247.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 247.1
Samples: 139

Max nTPM: 565.8
Min nTPM: 126.6
Std nTPM: 66.2
Median nTPM: 229.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 565.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 545.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 446.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 439.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 380.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 376.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 365.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 363.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 362.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 360.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 358.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.2
FF:10158-103A5 76 years, female 73.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.4
Pig sample Sample description nTPM
Midbrain
nTPM: 101.0
Samples: 4

Max nTPM: 145.3
Min nTPM: 77.7
Sample A Female 145.3
Sample B Female 93.9
Sample C Male 86.9
Sample D Male 77.7
Periaqueductal gray
nTPM: 77.8
Samples: 3

Max nTPM: 92.0
Min nTPM: 66.7
Sample B Female 74.7
Sample C Male 92.0
Sample D Male 66.7
Substantia nigra
nTPM: 96.8
Samples: 4

Max nTPM: 130.2
Min nTPM: 73.9
Sample A Female 130.2
Sample B Female 87.5
Sample C Male 95.7
Sample D Male 73.9
Superior colliculi
nTPM: 101.5
Samples: 4

Max nTPM: 127.5
Min nTPM: 86.6
Sample A Female 127.5
Sample B Female 95.1
Sample C Male 96.6
Sample D Male 86.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 59.3
Min nTPM: 44.4
Sample A Male 59.3
Sample B Male 44.4
Sample C Female 52.5
Sample D Female 51.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69352814 Antisense, RP_050412_01_B11, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.