BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA:61.0 nTPM
GTEx:60.1 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Mouse:73.6 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.8
1857 Female, age 85, left hemisphere 60.2
1854 Male, age 80, left hemisphere 59.5
2846 Female, age 79, unknown 59.2
2290 Female, age 72, unknown 58.3
2481 Female, age 94, left hemisphere 57.8
2288 Male, age 75, left hemisphere 56.8
1781 Male, age 74, unknown 56.2
2289 Male, age 61, right hemisphere 54.8
Claustrum
nTPM: 55.1
2491 Male, age 75, both hemispheres 59.0
2196 Female, age 79, unknown 57.0
2392 Female, age 94, both hemispheres 56.6
1956 Male, age 74, unknown 54.8
2292 Female, age 85, both hemispheres 54.6
2198 Male, age 80, both hemispheres 53.9
2284 Female, age 91, both hemispheres 53.5
2568 Male, age 61, both hemispheres 53.2
2645 Female, age 72, unknown 53.0
Globus pallidus, externus
nTPM: 61.0
1996 Male, age 80, right hemisphere 66.5
2772 Female, age 79, unknown 63.0
2395 Male, age 75, both hemispheres 60.2
2567 Female, age 72, unknown 57.8
2646 Male, age 61, right hemisphere 57.3
Globus pallidus, internus
nTPM: 60.7
2483 Female, age 94, right hemisphere 65.6
2287 Male, age 75, right hemisphere 62.6
1818 Male, age 74, unknown 60.7
2778 Female, age 91, both hemispheres 59.4
2111 Female, age 85, right hemisphere 59.3
2037 Male, age 80, right hemisphere 59.1
2566 Female, age 72, unknown 58.0
Nucleus accumbens
nTPM: 58.0
1806 Female, age 85, left hemisphere 60.1
1783 Male, age 74, unknown 58.7
2391 Female, age 94, left hemisphere 58.5
1856 Female, age 91, right hemisphere 58.0
2286 Male, age 75, left hemisphere 57.6
2732 Male, age 80, right hemisphere 57.6
2698 Female, age 72, unknown 57.1
2824 Male, age 61, right hemisphere 56.3
Nucleus basalis of Meynert
nTPM: 57.7
2821 Male, age 75, both hemispheres 58.4
2393 Male, age 80, right hemisphere 58.2
2484 Female, age 94, left hemisphere 57.4
2569 Male, age 61, both hemispheres 56.9
Nucleus of the diagonal band
nTPM: 56.4
1812 Female, age 91, both hemispheres 58.5
1979 Male, age 74, unknown 57.7
2775 Male, age 80, right hemisphere 56.2
2029 Male, age 61, right hemisphere 54.9
2195 Female, age 85, both hemispheres 54.9
Olfactory tubercle
nTPM: 55.1
1846 Male, age 80, right hemisphere 56.5
1998 Female, age 91, both hemispheres 56.4
2487 Female, age 94, left hemisphere 53.8
2856 Male, age 75, right hemisphere 53.5
Putamen
nTPM: 57.9
2466 Female, age 79, unknown 60.8
1937 Female, age 91, right hemisphere 60.0
1829 Male, age 74, unknown 58.2
2482 Female, age 94, left hemisphere 58.1
2647 Male, age 75, left hemisphere 56.8
2489 Female, age 72, unknown 56.2
1838 Male, age 80, right hemisphere 55.3
Septal nuclei
nTPM: 56.6
2031 Female, age 72, unknown 58.4
2199 Male, age 80, right hemisphere 57.6
1960 Male, age 74, unknown 57.1
2394 Male, age 61, left hemisphere 56.4
2059 Female, age 85, both hemispheres 56.3
2009 Female, age 91, both hemispheres 56.1
2629 Female, age 94, right hemisphere 54.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.9
Samples: 246

Max nTPM: 153.0
Min nTPM: 29.2
Std nTPM: 15.6
Median nTPM: 51.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 153.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 118.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 100.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 99.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 97.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 96.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 89.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 88.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 86.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 85.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.1
Samples: 246

Max nTPM: 155.7
Min nTPM: 28.7
Std nTPM: 17.3
Median nTPM: 57.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 155.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 153.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 121.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 120.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 110.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 108.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 104.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 100.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 95.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 91.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 88.4
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Brain - Putamen (basal ganglia)
Average nTPM: 57.8
Samples: 205

Max nTPM: 127.4
Min nTPM: 31.0
Std nTPM: 15.7
Median nTPM: 54.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 127.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 107.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 105.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 96.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 95.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 95.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 94.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 94.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 91.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 90.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 89.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.4
FF:10164-103B2 76 years, female 71.4
Globus pallidus
Scaled Tags Per Million: 93.1
FF:10175-103C4 60 years, female 102.6
FF:10161-103A8 76 years, female 83.6
Nucleus accumbens
Scaled Tags Per Million: 73.6
FF:10037-101F1 23-56 years, mixed 73.6
Putamen
Scaled Tags Per Million: 79.3
FF:10176-103C5 60 years, female 79.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 73.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.8
Samples: 4

Max nTPM: 72.9
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 72.0
Sample C Female 72.7
Sample D Female 72.9
Septum
nTPM: 73.6
Samples: 4

Max nTPM: 82.1
Min nTPM: 59.5
Sample A Male 59.5
Sample B Male 79.3
Sample C Female 82.1
Sample D Female 73.6
Ventral forebrain
nTPM: 64.9
Samples: 4

Max nTPM: 70.3
Min nTPM: 61.1
Sample A Male 61.1
Sample B Male 64.1
Sample C Female 64.2
Sample D Female 70.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74580978 Antisense, RP_060215_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74580978 Antisense, RP_060215_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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