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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:61.6 nTPM
HPA:61.6 nTPM
FANTOM5:89.4 Scaled Tags Per Million
Allen mouse:0.1 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 61.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 58.8
2090 Male, age 80, both hemispheres 61.7
2188 Female, age 91, both hemispheres 58.9
1984 Male, age 76, both hemispheres 58.3
2301 Female, age 85, both hemispheres 56.4
Dorsal cochlear nucleus
nTPM: 58.4
2802 Male, age 74, right hemisphere 61.0
2370 Male, age 61, both hemispheres 60.5
2187 Female, age 91, both hemispheres 58.0
2378 Male, age 80, both hemispheres 56.6
2058 Male, age 76, both hemispheres 56.1
Dorsal tegmental nucleus
nTPM: 59.1
2326 Male, age 74, both hemispheres 61.7
2083 Male, age 80, both hemispheres 60.3
1936 Male, age 76, left hemisphere 57.3
2358 Male, age 61, both hemispheres 57.0
Dorsolateral tegmental area
nTPM: 59.5
2751 Female, age 85, both hemispheres 61.4
2654 Male, age 80, both hemispheres 60.4
2360 Male, age 74, both hemispheres 59.8
2141 Male, age 76, both hemispheres 58.9
2337 Male, age 61, both hemispheres 57.0
Kolliker-Fuse nucleus
nTPM: 58.9
2315 Male, age 76, right hemisphere 61.5
2793 Female, age 91, left hemisphere 57.7
2163 Male, age 80, both hemispheres 57.5
Lateral lemniscal nuclei
nTPM: 56.4
2746 Female, age 85, left hemisphere 57.2
2036 Male, age 80, both hemispheres 56.7
2320 Female, age 91, left hemisphere 56.7
2453 Male, age 74, right hemisphere 56.2
2169 Male, age 76, both hemispheres 55.4
Lateral parabrachial nucleus
nTPM: 58.1
2792 Male, age 76, both hemispheres 59.4
2013 Male, age 80, both hemispheres 59.0
2139 Female, age 85, right hemisphere 58.3
2790 Male, age 61, both hemispheres 55.7
Lateral vestibular nucleus
nTPM: 57.9
2311 Male, age 80, both hemispheres 59.6
2184 Male, age 76, both hemispheres 56.3
Locus coeruleus
nTPM: 57.9
2014 Male, age 55, unknown 59.1
2123 Female, age 91, both hemispheres 58.9
1980 Male, age 76, both hemispheres 58.8
2317 Female, age 72, unknown 57.9
2162 Male, age 80, both hemispheres 57.6
2720 Male, age 74, both hemispheres 56.9
2788 Male, age 74, unknown 56.3
Medial olivary nucleus
nTPM: 61.6
1943 Male, age 61, both hemispheres 63.9
1962 Male, age 76, both hemispheres 62.7
2138 Female, age 91, both hemispheres 60.5
2851 Male, age 80, both hemispheres 59.2
Medial parabrachial nucleus
nTPM: 58.2
2170 Female, age 91, both hemispheres 60.5
2463 Female, age 85, right hemisphere 59.0
2854 Male, age 80, both hemispheres 58.7
2786 Male, age 76, both hemispheres 56.8
2156 Male, age 61, both hemispheres 56.1
Medial periolivary nuclei
nTPM: 56.2
2791 Male, age 74, right hemisphere 58.1
2063 Male, age 76, both hemispheres 57.5
2081 Male, age 80, both hemispheres 56.4
2458 Female, age 91, both hemispheres 54.6
2171 Female, age 85, both hemispheres 54.5
Motor facial nucleus
nTPM: 55.9
2126 Male, age 61, both hemispheres 58.7
2365 Male, age 74, right hemisphere 57.2
2795 Female, age 91, both hemispheres 56.7
2062 Male, age 76, both hemispheres 56.0
2697 Female, age 85, both hemispheres 54.8
2327 Male, age 80, both hemispheres 52.1
Motor trigeminal nucleus
nTPM: 56.6
2079 Male, age 80, both hemispheres 58.8
2335 Male, age 61, both hemispheres 57.2
2309 Male, age 76, both hemispheres 56.9
2321 Female, age 91, both hemispheres 55.0
2560 Male, age 74, both hemispheres 55.0
Nuclei of the trapezoid body
nTPM: 55.5
1983 Male, age 76, both hemispheres 58.4
2159 Male, age 61, both hemispheres 55.2
2735 Female, age 85, both hemispheres 54.8
2166 Male, age 80, both hemispheres 54.7
2368 Female, age 91, both hemispheres 54.5
Paramedian reticular nucleus
nTPM: 59.4
2052 Male, age 76, both hemispheres 62.8
2057 Male, age 80, both hemispheres 59.8
2313 Male, age 61, both hemispheres 58.3
2050 Female, age 85, both hemispheres 56.7
Pontine nuclei
nTPM: 56.7
2109 Female, age 72, unknown 58.5
2319 Female, age 91, both hemispheres 58.4
1968 Male, age 76, left hemisphere 57.8
1863 Male, age 55, unknown 57.2
2454 Male, age 74, left hemisphere 56.5
2727 Male, age 61, right hemisphere 56.1
2115 Male, age 80, left hemisphere 55.8
2787 Female, age 85, both hemispheres 53.6
Pontine raphe nucleus
nTPM: 56.2
2853 Male, age 76, midline 56.3
2122 Female, age 85, midline 56.0
Posteroventral cochlear nucleus
nTPM: 58.9
2341 Male, age 80, both hemispheres 61.7
2135 Female, age 91, both hemispheres 59.5
2752 Female, age 85, both hemispheres 58.5
2371 Male, age 61, both hemispheres 57.8
2070 Male, age 76, both hemispheres 57.2
Principal sensory trigeminal nucleus
nTPM: 56.0
2367 Female, age 91, left hemisphere 56.7
2158 Male, age 61, both hemispheres 56.5
2008 Male, age 80, left hemisphere 56.4
2324 Male, age 76, both hemispheres 54.3
Reticular pontine nucleus, caudal
nTPM: 56.0
2559 Male, age 74, both hemispheres 58.1
2092 Male, age 76, both hemispheres 57.5
2457 Female, age 91, both hemispheres 54.6
2332 Male, age 80, right hemisphere 53.5
Reticular pontine nucleus, oral
nTPM: 58.4
2366 Female, age 91, both hemispheres 60.3
1939 Male, age 80, both hemispheres 59.5
2012 Female, age 85, both hemispheres 58.1
2167 Male, age 76, both hemispheres 57.7
2361 Male, age 74, both hemispheres 56.4
Reticulotegmental nucleus
nTPM: 56.8
2452 Male, age 74, both hemispheres 58.6
2333 Male, age 80, both hemispheres 56.6
2322 Female, age 91, both hemispheres 56.1
2325 Male, age 76, both hemispheres 55.9
Spinal trigeminal nucleus, oral
nTPM: 56.8
2737 Female, age 85, both hemispheres 59.0
1978 Male, age 76, both hemispheres 56.5
2164 Male, age 80, both hemispheres 54.7
Subcoeruleus area
nTPM: 59.0
2451 Male, age 74, both hemispheres 61.1
2369 Female, age 85, left hemisphere 60.9
1958 Male, age 80, both hemispheres 58.3
2323 Female, age 91, left hemisphere 57.8
2089 Male, age 76, left hemisphere 57.1
Superior olive
nTPM: 56.9
2364 Male, age 74, right hemisphere 60.2
2020 Male, age 76, both hemispheres 59.9
1875 Female, age 85, both hemispheres 57.0
2329 Male, age 80, right hemisphere 54.0
2561 Female, age 91, both hemispheres 53.4
Superior vestibular nucleus
nTPM: 60.1
2383 Male, age 74, both hemispheres 62.0
2015 Male, age 80, both hemispheres 61.3
2061 Male, age 76, both hemispheres 57.1
Ventral periolivary nuclei
nTPM: 55.6
2023 Male, age 76, both hemispheres 60.6
2794 Female, age 91, left hemisphere 54.7
2165 Male, age 80, both hemispheres 54.0
2130 Female, age 85, both hemispheres 53.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 55.8
2161 Male, age 80, both hemispheres 58.1
2359 Male, age 61, both hemispheres 56.5
1959 Male, age 76, both hemispheres 55.9
2456 Female, age 91, both hemispheres 55.6
2840 Female, age 85, both hemispheres 54.6
2449 Male, age 74, both hemispheres 54.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 89.4
FF:10165-103B3 76 years, female 94.9
FF:10182-103D2 60 years, female 84.0
Pons
Scaled Tags Per Million: 70.3
FF:10033-101E6 18-54 years, mixed 70.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.1
74580978 Antisense, RP_060215_02_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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