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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:15.2 nTPM
GTEx:23.9 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:3.7 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 15.2
Sample id Sample description nTPM
Putamen
nTPM: 15.2
2489 Female, age 72, unknown 19.8
1937 Female, age 91, right hemisphere 19.4
1838 Male, age 80, right hemisphere 15.9
2482 Female, age 94, left hemisphere 15.8
2466 Female, age 79, unknown 14.7
1829 Male, age 74, unknown 12.1
2647 Male, age 75, left hemisphere 8.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 23.9
Samples: 205

Max nTPM: 53.4
Min nTPM: 2.6
Std nTPM: 11.3
Median nTPM: 22.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 53.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 52.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 50.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 49.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 49.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 46.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 45.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 45.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 45.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 44.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 44.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 43.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 42.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 40.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 39.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 39.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 39.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 38.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 38.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 38.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 38.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 37.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 37.6
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 37.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 37.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 37.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 36.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 36.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 36.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 36.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 35.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 35.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 35.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 35.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 35.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 35.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 34.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 34.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 34.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 34.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 34.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 34.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 34.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 33.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 33.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 33.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 32.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 32.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 32.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 32.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 31.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 31.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 31.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 30.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 30.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 30.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 29.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 29.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 29.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 28.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 28.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 28.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 28.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 28.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 28.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 28.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 28.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 28.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 28.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 28.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 27.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 27.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 27.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 27.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 27.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 26.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 25.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 25.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 25.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 25.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 25.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 25.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 25.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 25.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 25.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 24.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 24.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 24.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 23.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 23.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 23.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 23.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 23.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 23.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 23.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 23.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 23.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 23.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 22.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 22.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 22.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 22.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 22.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 22.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 21.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 21.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 21.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 21.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 21.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 21.1
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 20.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 20.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 20.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 20.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 20.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 20.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 20.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 20.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 20.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 19.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 19.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 19.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 19.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 19.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 19.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 19.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 19.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 18.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 18.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 18.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 17.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 17.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 17.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 17.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 17.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 16.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 16.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 16.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 16.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 16.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 16.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 15.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 15.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 15.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 15.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 15.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 15.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 15.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 15.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 15.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 14.9
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 14.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 14.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 14.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 14.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 14.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 13.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 13.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 13.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 13.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 13.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 13.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 13.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 13.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 12.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 12.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 12.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 12.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 12.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 12.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 11.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 11.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 11.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 11.2
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 10.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 10.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 10.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 9.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 9.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 9.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 9.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 9.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 9.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 9.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 8.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 8.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 8.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 7.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 7.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 7.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 7.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 7.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 7.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 6.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 5.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 5.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 5.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 5.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 2.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2.6
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.7
Pig sample Sample description nTPM
Putamen
nTPM: 3.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 3.2
Sample C Male 3.5
Sample D Male 5.2

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