MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:249.2 nTPM
HPA:249.2 nTPM
GTEx:1555.1 nTPM
FANTOM5:0.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 249.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 125.8
2219 Male, age 76, both hemispheres 534.5
2828 Female, age 72, unknown 119.6
2666 Male, age 74, left hemisphere 89.9
1830 Male, age 51, unknown 87.7
1833 Male, age 53, unknown 87.6
1870 Female, age 42, unknown 80.2
2019 Male, age 18, unknown 76.5
2411 Female, age 72, unknown 75.9
2586 Male, age 75, left hemisphere 60.2
1827 Male, age 72, unknown 46.4
Dorsal raphe nucleus
nTPM: 119.6
2298 Female, age 72, unknown 352.6
1828 Male, age 53, unknown 78.5
2016 Female, age 72, unknown 68.5
2750 Male, age 76, both hemispheres 63.6
2047 Male, age 72, unknown 34.8
Inferior colliculus
nTPM: 68.6
1890 Male, age 53, unknown 93.3
1848 Female, age 42, unknown 72.9
2849 Male, age 72, unknown 56.9
2097 Female, age 72, unknown 51.2
Median raphe nucleus
nTPM: 116.1
2220 Male, age 76, midline 116.1
Pedunculopontine tegmental nucleus
nTPM: 116.4
2334 Male, age 80, both hemispheres 201.4
1921 Female, age 85, both hemispheres 77.3
2338 Male, age 61, both hemispheres 70.5
Periaquaductal grey, anterior
nTPM: 62.3
2502 Female, age 75, unknown 79.9
1795 Male, age 51, unknown 63.6
1947 Male, age 18, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 72.4
1831 Male, age 72, unknown 131.2
2850 Male, age 76, both hemispheres 71.0
2464 Female, age 72, unknown 56.0
1840 Male, age 53, unknown 31.6
Periaquaductal grey, lateral
nTPM: 50.6
2272 Male, age 74, both hemispheres 63.1
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 40.5
Pretectal area
nTPM: 61.9
1817 Female, age 42, unknown 87.0
1816 Male, age 51, unknown 74.5
2007 Male, age 72, unknown 72.0
2825 Male, age 18, unknown 71.1
2667 Female, age 75, unknown 66.8
1815 Male, age 53, unknown 61.1
2316 Male, age 76, right hemisphere 58.8
2224 Female, age 72, unknown 54.9
2273 Male, age 74, both hemispheres 54.3
1944 Female, age 72, unknown 51.3
2407 Male, age 75, both hemispheres 29.0
Red nucleus
nTPM: 111.5
1904 Male, age 53, unknown 195.6
2227 Male, age 72, unknown 140.2
2769 Male, age 72, unknown 139.4
1821 Female, age 72, unknown 134.0
2503 Female, age 72, unknown 116.9
2823 Male, age 76, right hemisphere 103.1
2588 Male, age 74, left hemisphere 102.3
1865 Male, age 51, unknown 100.3
2785 Male, age 18, unknown 83.3
2725 Female, age 75, unknown 81.0
1954 Female, age 42, unknown 77.1
2584 Male, age 75, left hemisphere 64.4
Substantia nigra
nTPM: 109.8
2665 Male, age 74, both hemispheres 205.8
2699 Male, age 18, unknown 204.3
1851 Male, age 51, unknown 134.4
2241 Male, age 72, unknown 108.4
1916 Female, age 42, unknown 107.5
2409 Female, age 72, unknown 77.1
1941 Male, age 53, unknown 74.7
1889 Female, age 72, unknown 72.0
2590 Female, age 75, unknown 64.7
2583 Male, age 75, right hemisphere 49.6
Superior colliculus
nTPM: 77.8
2587 Male, age 74, left hemisphere 148.5
2668 Female, age 75, unknown 95.9
1796 Male, age 53, unknown 88.2
1995 Male, age 72, unknown 87.2
1895 Male, age 76, right hemisphere 76.8
1913 Female, age 42, unknown 72.1
1839 Male, age 51, unknown 66.3
2261 Male, age 18, unknown 65.3
2087 Female, age 72, unknown 56.7
2664 Male, age 75, both hemispheres 21.0
Ventral tegmental area
nTPM: 249.2
2218 Male, age 76, both hemispheres 467.3
1915 Female, age 42, unknown 361.0
2021 Male, age 53, unknown 209.4
2223 Female, age 72, unknown 178.0
1942 Male, age 51, unknown 152.5
2410 Female, age 72, unknown 127.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1555.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1555.1
Samples: 139

Max nTPM: 24523.8
Min nTPM: 42.2
Std nTPM: 2910.5
Median nTPM: 803.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 24523.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16177.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13446.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9036.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 8543.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7889.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 4203.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 4064.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 3741.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3592.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3483.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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