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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:205.9 nTPM
GTEx:205.9 nTPM
FANTOM5:160.2 Scaled Tags Per Million
Pig:119.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 205.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 205.9
Samples: 105

Max nTPM: 330.2
Min nTPM: 151.0
Std nTPM: 32.6
Median nTPM:
491_1 89 years, female 330.2
490_1 67 years, female 315.9
413_1 59 years, female 313.1
415_1 77 years, female 286.0
162_1 79 years, female 273.4
414_1 84 years, female 260.5
495_1 57 years, female 254.8
466_1 57 years, female 246.9
35_1 74 years, female 245.3
501_1 88 years, male 244.9
17_1 71 years, male 242.6
315_1 62 years, female 242.5
137_1 83 years, male 241.3
42_1 85 years, male 236.0
41_1 94 years, female 235.3
142_1 61 years, female 232.7
120_1 70 years, female 232.3
145_1 84 years, male 230.0
32_1 67 years, male 229.8
81_1 67 years, male 229.2
4_1 88 years, female 227.8
379_1 60 years, male 227.4
126_1 63 years, male 225.4
518_1 75 years, female 222.1
18_1 88 years, male 220.8
375_1 74 years, female 220.4
313_1 79 years, female 219.8
266_1 85 years, male 218.8
149_1 88 years, male 218.0
404_1 82 years, female 217.4
6_1 73 years, female 217.1
117_1 61 years, male 217.0
447_1 81 years, male 216.5
246_1 77 years, male 215.7
386_1 76 years, male 215.1
9_1 66 years, female 214.4
319_1 81 years, male 213.6
308_1 70 years, female 212.5
324_1 76 years, male 212.2
89_1 63 years, male 211.3
119_1 70 years, female 210.2
43_1 64 years, female 210.0
288_1 66 years, female 209.9
322_1 76 years, male 209.2
316_1 62 years, male 207.9
153_1 70 years, female 207.4
307_1 66 years, female 206.1
237_1 82 years, male 204.1
406_1 79 years, male 203.7
115_1 83 years, male 203.1
264_1 73 years, female 202.4
99_1 64 years, male 201.7
526_1 61 years, male 200.4
321_1 62 years, female 199.4
189_1 76 years, male 199.0
311_1 78 years, male 198.8
384_1 83 years, male 198.7
389_1 86 years, female 198.7
499_1 55 years, female 198.3
405_1 91 years, male 196.5
139_1 64 years, female 196.4
452_1 88 years, female 195.8
320_1 89 years, female 194.9
376_1 75 years, female 194.9
265_1 87 years, male 194.4
254_1 77 years, female 194.1
217_1 76 years, male 194.0
335_1 73 years, female 193.3
2_1 77 years, female 193.2
377_1 82 years, female 192.9
352_1 62 years, male 191.8
229_1 69 years, female 191.5
468_1 89 years, male 191.3
396_1 62 years, male 187.6
348_1 84 years, male 186.7
314_1 67 years, male 186.5
243_1 75 years, male 185.7
480_1 63 years, male 185.5
506_1 65 years, male 185.4
347_1 72 years, male 184.2
351_1 91 years, male 184.0
317_1 60 years, male 182.7
251_1 78 years, male 181.6
293_1 68 years, female 181.4
355_1 70 years, female 181.2
354_1 81 years, female 178.4
173_1 67 years, male 178.1
425_1 59 years, female 177.8
109_1 81 years, female 174.3
394_1 75 years, female 173.0
172_1 72 years, female 172.1
177_1 74 years, male 171.8
292_1 71 years, male 170.1
286_1 68 years, female 168.7
356_1 87 years, female 167.9
218_1 71 years, female 166.9
350_1 84 years, female 166.1
318_1 68 years, male 165.3
291_1 76 years, male 162.6
295_1 61 years, female 162.1
349_1 83 years, male 161.9
517_1 88 years, male 159.9
353_1 82 years, female 157.1
503_1 68 years, male 153.4
163_1 78 years, male 151.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 160.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 160.2
FF:10030-101E3 24-65 years, mixed 160.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 119.8
Pig sample Sample description nTPM
Retina
nTPM: 119.8
Samples: 4

Max nTPM: 132.9
Min nTPM: 112.2
Sample A Female 112.2
Sample B Female 119.6
Sample C Male 132.9
Sample D Male 114.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.