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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:187.4 nTPM
HPA:187.4 nTPM
GTEx:194.7 nTPM
FANTOM5:198.4 Scaled Tags Per Million
Pig:201.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 187.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 175.5
1981 Female, age 72, midline 191.4
2048 Male, age 55, midline 185.3
2565 Male, age 75, midline 171.4
2816 Male, age 47, midline 167.2
2194 Female, age 79, both hemispheres 162.1
Cervical spinal cord, dorsal horn
nTPM: 187.4
2069 Male, age 47, both hemispheres 202.3
2173 Female, age 72, unknown 191.3
2296 Male, age 66, both hemispheres 190.0
1877 Male, age 55, unknown 186.8
2297 Male, age 75, both hemispheres 183.4
2721 Male, age 90, both hemispheres 170.5
Cervical spinal cord, ventral horn
nTPM: 178.0
2098 Female, age 72, unknown 202.4
2480 Male, age 75, both hemispheres 186.8
2295 Male, age 66, both hemispheres 184.0
2809 Male, age 90, both hemispheres 176.3
2068 Male, age 55, unknown 166.3
2820 Female, age 79, both hemispheres 152.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 194.7
Samples: 159

Max nTPM: 303.4
Min nTPM: 114.9
Std nTPM: 33.6
Median nTPM: 193.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 303.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 298.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 275.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 273.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 262.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 257.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 256.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 252.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 250.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 249.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 248.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 244.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 243.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 242.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 240.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 238.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 237.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 236.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 235.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 232.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 232.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 231.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 231.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 228.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 228.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 227.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 226.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 224.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 223.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 221.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 221.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 221.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 219.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 219.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 218.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 218.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 217.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 216.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 216.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 215.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 214.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 214.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 213.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 212.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 211.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 210.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 209.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 208.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 208.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 207.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 207.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 207.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 207.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 207.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 206.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 204.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 204.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 203.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 203.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 202.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 202.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 202.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 201.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 200.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 199.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 198.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 198.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 198.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 197.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 196.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 196.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 195.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 195.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 195.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 195.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 194.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 193.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 193.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 193.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 193.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 193.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 192.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 191.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 190.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 190.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 190.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 189.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 189.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 189.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 187.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 187.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 186.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 186.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 184.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 182.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 181.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 181.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 180.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 180.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 179.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 179.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 179.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 178.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 178.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 177.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 177.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 176.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 175.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 175.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 174.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 173.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 173.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 173.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 173.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 172.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 171.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 170.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 170.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 169.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 167.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 167.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 165.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 164.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 163.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 160.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 160.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 160.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 160.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 160.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 159.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 153.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 150.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 150.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 150.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 145.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 145.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 137.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 136.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 134.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 133.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 132.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 130.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 127.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 114.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 198.4
FF:10181-103D1 60 years, female 233.8
FF:10159-103A6 76 years, female 163.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 201.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 201.3
Samples: 4

Max nTPM: 232.3
Min nTPM: 167.3
Sample A Female 177.2
Sample B Female 228.4
Sample C Male 232.3
Sample D Male 167.3
Ventral spinal cord
nTPM: 188.7
Samples: 4

Max nTPM: 204.4
Min nTPM: 169.2
Sample A Female 169.2
Sample B Female 189.9
Sample C Male 191.4
Sample D Male 204.4

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