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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:54.1 nTPM
HPA:54.1 nTPM
GTEx:118.6 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:29.1 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 54.1
Sample id Sample description nTPM
Amygdala
nTPM: 49.4
2814 Male, age 76, right hemisphere 61.3
2514 Male, age 75, right hemisphere 48.5
1987 Female, age 91, left hemisphere 46.8
2517 Female, age 94, left hemisphere 45.9
2695 Female, age 67, right hemisphere 44.6
Basal amygdala
nTPM: 54.1
2243 Female, age 91, right hemisphere 61.2
2609 Male, age 75, right hemisphere 54.9
2685 Female, age 94, left hemisphere 52.7
2827 Female, age 67, right hemisphere 52.6
1955 Male, age 76, both hemispheres 51.9
2110 Male, age 80, left hemisphere 51.1
Central amygdala
nTPM: 51.1
1905 Male, age 76, both hemispheres 58.7
2826 Female, age 94, left hemisphere 51.0
2239 Male, age 80, left hemisphere 50.0
2701 Female, age 91, right hemisphere 48.2
2515 Male, age 75, right hemisphere 47.7
Corticomedial amygdala
nTPM: 52.6
2242 Female, age 91, right hemisphere 58.9
2829 Male, age 80, left hemisphere 56.4
2240 Male, age 76, both hemispheres 52.3
2428 Male, age 75, right hemisphere 50.8
2429 Female, age 94, left hemisphere 49.1
2535 Female, age 67, right hemisphere 48.1
Lateral amygdala
nTPM: 49.7
1883 Male, age 76, both hemispheres 56.6
2534 Female, age 94, left hemisphere 51.0
2830 Female, age 67, right hemisphere 48.9
2516 Male, age 75, right hemisphere 48.7
2255 Female, age 91, right hemisphere 48.0
2256 Male, age 80, left hemisphere 45.2
Stria terminalis, bed nucleus
nTPM: 46.8
1974 Female, age 91, both hemispheres 50.2
2486 Female, age 94, both hemispheres 49.1
2201 Male, age 74, unknown 41.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 118.6
Samples: 152

Max nTPM: 410.9
Min nTPM: 10.6
Std nTPM: 58.0
Median nTPM: 114.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 410.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 387.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 255.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 253.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 249.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 243.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 226.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 211.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 196.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 191.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 186.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 185.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 184.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 182.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 179.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 178.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 174.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 174.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 172.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 169.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 167.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 167.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 166.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 163.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 161.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 155.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 151.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 151.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 151.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 150.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 150.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 149.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 144.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 142.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 141.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 140.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 138.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 137.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 135.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 133.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 133.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 130.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 129.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 128.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 125.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 124.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 124.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 123.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 122.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 121.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 120.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 119.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 118.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 118.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 117.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 113.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 112.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 110.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 109.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 105.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 105.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 104.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 104.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 101.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 100.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 98.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 98.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 97.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 92.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 92.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 92.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 91.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 90.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 87.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 86.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 86.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 80.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 77.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 72.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 71.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 71.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 70.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 69.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 68.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 63.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 62.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 59.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 55.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 53.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 48.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 46.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 45.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 45.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 43.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 38.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 38.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 30.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.2
FF:10151-102I7 76 years, female 82.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.4
Pig sample Sample description nTPM
Amygdala
nTPM: 25.4
Samples: 4

Max nTPM: 29.3
Min nTPM: 23.1
Sample A Female 29.3
Sample B Female 23.6
Sample C Male 23.1
Sample D Male 25.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.1
Samples: 4

Max nTPM: 32.9
Min nTPM: 24.8
Sample A Male 27.6
Sample B Male 32.9
Sample C Female 24.8
Sample D Female 31.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
70194600 Antisense, RP_050517_01_G01, Mouse strain C57BL/6J (56 days, male) 0.2

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