MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:245.5 nTPM
HPA:245.5 nTPM
GTEx:485.0 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:63.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 245.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 238.0
2828 Female, age 72, unknown 247.8
2411 Female, age 72, unknown 244.6
1827 Male, age 72, unknown 243.3
1870 Female, age 42, unknown 242.6
1833 Male, age 53, unknown 240.7
2586 Male, age 75, left hemisphere 240.2
1830 Male, age 51, unknown 232.5
2666 Male, age 74, left hemisphere 232.3
2219 Male, age 76, both hemispheres 230.4
2019 Male, age 18, unknown 226.0
Dorsal raphe nucleus
nTPM: 244.5
2047 Male, age 72, unknown 248.5
2016 Female, age 72, unknown 246.7
2298 Female, age 72, unknown 244.2
2750 Male, age 76, both hemispheres 242.6
1828 Male, age 53, unknown 240.8
Inferior colliculus
nTPM: 235.3
1848 Female, age 42, unknown 237.3
2849 Male, age 72, unknown 237.0
1890 Male, age 53, unknown 233.9
2097 Female, age 72, unknown 233.2
Median raphe nucleus
nTPM: 241.3
2220 Male, age 76, midline 241.3
Pedunculopontine tegmental nucleus
nTPM: 238.9
1921 Female, age 85, both hemispheres 244.4
2334 Male, age 80, both hemispheres 239.6
2338 Male, age 61, both hemispheres 232.7
Periaquaductal grey, anterior
nTPM: 239.7
1947 Male, age 18, unknown 242.6
2502 Female, age 75, unknown 241.4
1795 Male, age 51, unknown 235.2
Periaquaductal grey, dorsal
nTPM: 236.1
1840 Male, age 53, unknown 244.6
2464 Female, age 72, unknown 236.0
2850 Male, age 76, both hemispheres 234.9
1831 Male, age 72, unknown 229.0
Periaquaductal grey, lateral
nTPM: 236.3
2053 Male, age 18, unknown 244.6
2140 Male, age 76, both hemispheres 239.9
2272 Male, age 74, both hemispheres 224.5
Pretectal area
nTPM: 237.2
2316 Male, age 76, right hemisphere 253.5
2825 Male, age 18, unknown 249.3
2667 Female, age 75, unknown 240.8
1815 Male, age 53, unknown 240.5
1944 Female, age 72, unknown 238.5
1817 Female, age 42, unknown 238.2
2224 Female, age 72, unknown 236.9
1816 Male, age 51, unknown 234.0
2273 Male, age 74, both hemispheres 230.1
2007 Male, age 72, unknown 225.7
2407 Male, age 75, both hemispheres 222.4
Red nucleus
nTPM: 245.5
2503 Female, age 72, unknown 260.1
1904 Male, age 53, unknown 253.0
1821 Female, age 72, unknown 252.7
1954 Female, age 42, unknown 252.2
2769 Male, age 72, unknown 250.1
2227 Male, age 72, unknown 248.5
2823 Male, age 76, right hemisphere 248.3
1865 Male, age 51, unknown 248.2
2588 Male, age 74, left hemisphere 239.9
2584 Male, age 75, left hemisphere 232.4
2725 Female, age 75, unknown 232.1
2785 Male, age 18, unknown 228.9
Substantia nigra
nTPM: 243.7
2699 Male, age 18, unknown 258.4
1851 Male, age 51, unknown 252.3
1916 Female, age 42, unknown 249.8
2409 Female, age 72, unknown 248.7
2241 Male, age 72, unknown 248.0
2665 Male, age 74, both hemispheres 242.5
2590 Female, age 75, unknown 238.9
1889 Female, age 72, unknown 237.9
1941 Male, age 53, unknown 231.4
2583 Male, age 75, right hemisphere 229.5
Superior colliculus
nTPM: 238.0
2668 Female, age 75, unknown 248.7
1913 Female, age 42, unknown 242.5
2087 Female, age 72, unknown 238.9
1796 Male, age 53, unknown 238.8
1895 Male, age 76, right hemisphere 238.2
1839 Male, age 51, unknown 237.8
2587 Male, age 74, left hemisphere 236.5
1995 Male, age 72, unknown 235.8
2261 Male, age 18, unknown 232.8
2664 Male, age 75, both hemispheres 229.9
Ventral tegmental area
nTPM: 240.8
1915 Female, age 42, unknown 245.5
2223 Female, age 72, unknown 245.0
2410 Female, age 72, unknown 242.4
1942 Male, age 51, unknown 242.1
2218 Male, age 76, both hemispheres 236.0
2021 Male, age 53, unknown 233.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 485.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 485.0
Samples: 139

Max nTPM: 1368.5
Min nTPM: 155.1
Std nTPM: 230.8
Median nTPM: 441.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1368.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1154.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1107.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1073.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1072.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1029.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 967.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 933.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 910.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 894.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 892.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.3
FF:10158-103A5 76 years, female 74.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 10.2
Sample A Female 39.4
Sample B Female 25.6
Sample C Male 12.3
Sample D Male 10.2
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 23.7
Min nTPM: 19.7
Sample B Female 23.7
Sample C Male 21.9
Sample D Male 19.7
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 29.2
Min nTPM: 16.7
Sample A Female 29.2
Sample B Female 20.9
Sample C Male 16.7
Sample D Male 21.9
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 19.6
Min nTPM: 13.4
Sample A Female 19.6
Sample B Female 13.4
Sample C Male 13.9
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 68.1
Min nTPM: 59.6
Sample A Male 68.1
Sample B Male 65.8
Sample C Female 59.8
Sample D Female 59.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71735833 Antisense, RP_051010_03_C07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.