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S100A13
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  • S100A13
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:245.8 nTPM
HPA:245.8 nTPM
GTEx:329.3 nTPM
FANTOM5:63.3 Scaled Tags Per Million
Pig:22.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 245.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 238.4
2048 Male, age 55, midline 250.0
1981 Female, age 72, midline 249.1
2816 Male, age 47, midline 232.8
2565 Male, age 75, midline 232.0
2194 Female, age 79, both hemispheres 227.9
Cervical spinal cord, dorsal horn
nTPM: 239.3
2173 Female, age 72, unknown 260.2
2296 Male, age 66, both hemispheres 257.6
1877 Male, age 55, unknown 239.8
2069 Male, age 47, both hemispheres 236.5
2297 Male, age 75, both hemispheres 223.1
2721 Male, age 90, both hemispheres 218.5
Cervical spinal cord, ventral horn
nTPM: 245.8
2098 Female, age 72, unknown 262.8
2809 Male, age 90, both hemispheres 255.8
2480 Male, age 75, both hemispheres 246.6
2295 Male, age 66, both hemispheres 244.7
2068 Male, age 55, unknown 239.9
2820 Female, age 79, both hemispheres 225.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 329.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 329.3
Samples: 159

Max nTPM: 639.1
Min nTPM: 89.2
Std nTPM: 112.7
Median nTPM: 321.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 639.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 634.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 595.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 595.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 588.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 571.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 556.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 545.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 545.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 542.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 524.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 516.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 507.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 503.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 489.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 482.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 474.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 469.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 467.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 466.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 464.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 453.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 452.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 449.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 446.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 442.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 442.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 432.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 426.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 420.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 418.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 417.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 413.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 411.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 410.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 408.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 400.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 397.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 395.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 394.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 393.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 391.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 390.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 380.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 379.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 379.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 378.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 377.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 376.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 376.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 374.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 372.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 371.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 369.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 362.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 358.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 358.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 355.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 352.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 350.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 349.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 347.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 345.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 342.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 340.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 339.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 339.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 339.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 337.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 335.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 330.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 329.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 327.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 327.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 327.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 326.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 324.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 321.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 321.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 321.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 321.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 319.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 319.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 317.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 317.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 316.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 315.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 313.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 312.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 312.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 310.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 309.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 304.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 304.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 298.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 298.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 298.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 294.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 293.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 288.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 284.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 282.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 281.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 279.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 273.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 272.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 270.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 270.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 261.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 259.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 259.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 258.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 257.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 257.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 257.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 255.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 250.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 249.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 246.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 246.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 246.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 244.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 243.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 243.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 242.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 239.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 239.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 232.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 232.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 231.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 230.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 230.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 228.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 225.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 222.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 213.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 211.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 211.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 209.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 209.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 206.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 196.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 192.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 180.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 176.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 168.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 162.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 160.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 156.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 154.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 153.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 149.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 140.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 132.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 113.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 63.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 63.3
FF:10181-103D1 60 years, female 79.6
FF:10159-103A6 76 years, female 47.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 19.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 16.6
Sample A Female 19.4
Sample B Female 22.0
Sample C Male 20.0
Sample D Male 16.6
Ventral spinal cord
nTPM: 22.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 25.6
Sample C Male 22.5
Sample D Male 21.1

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