MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.1 nTPM
HPA:127.1 nTPM
GTEx:78.0 nTPM
FANTOM5:293.9 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:52.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.5
1830 Male, age 51, unknown 137.2
2411 Female, age 72, unknown 136.4
2019 Male, age 18, unknown 124.0
1833 Male, age 53, unknown 116.7
1870 Female, age 42, unknown 106.6
2828 Female, age 72, unknown 88.5
2219 Male, age 76, both hemispheres 66.8
1827 Male, age 72, unknown 65.5
2666 Male, age 74, left hemisphere 63.8
2586 Male, age 75, left hemisphere 59.7
Dorsal raphe nucleus
nTPM: 70.6
2750 Male, age 76, both hemispheres 146.5
2016 Female, age 72, unknown 70.4
1828 Male, age 53, unknown 66.4
2047 Male, age 72, unknown 36.9
2298 Female, age 72, unknown 33.0
Inferior colliculus
nTPM: 58.0
1890 Male, age 53, unknown 69.7
2849 Male, age 72, unknown 58.8
1848 Female, age 42, unknown 57.1
2097 Female, age 72, unknown 46.4
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Pedunculopontine tegmental nucleus
nTPM: 98.1
2338 Male, age 61, both hemispheres 112.0
2334 Male, age 80, both hemispheres 98.9
1921 Female, age 85, both hemispheres 83.5
Periaquaductal grey, anterior
nTPM: 43.0
1947 Male, age 18, unknown 48.8
1795 Male, age 51, unknown 43.0
2502 Female, age 75, unknown 37.3
Periaquaductal grey, dorsal
nTPM: 42.0
2464 Female, age 72, unknown 74.3
1831 Male, age 72, unknown 48.6
2850 Male, age 76, both hemispheres 25.4
1840 Male, age 53, unknown 19.8
Periaquaductal grey, lateral
nTPM: 52.4
2272 Male, age 74, both hemispheres 65.2
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 31.7
Pretectal area
nTPM: 58.3
2316 Male, age 76, right hemisphere 101.9
2407 Male, age 75, both hemispheres 79.4
1815 Male, age 53, unknown 78.0
2273 Male, age 74, both hemispheres 60.0
2825 Male, age 18, unknown 58.6
2667 Female, age 75, unknown 57.0
2007 Male, age 72, unknown 55.3
1817 Female, age 42, unknown 49.9
2224 Female, age 72, unknown 44.6
1944 Female, age 72, unknown 32.4
1816 Male, age 51, unknown 24.4
Red nucleus
nTPM: 127.1
2823 Male, age 76, right hemisphere 171.9
1865 Male, age 51, unknown 154.2
2769 Male, age 72, unknown 138.5
2227 Male, age 72, unknown 138.0
1904 Male, age 53, unknown 137.6
2785 Male, age 18, unknown 131.2
1821 Female, age 72, unknown 130.4
2503 Female, age 72, unknown 129.6
2588 Male, age 74, left hemisphere 121.7
1954 Female, age 42, unknown 104.8
2725 Female, age 75, unknown 86.2
2584 Male, age 75, left hemisphere 81.1
Substantia nigra
nTPM: 69.4
2409 Female, age 72, unknown 99.2
2583 Male, age 75, right hemisphere 97.3
2590 Female, age 75, unknown 96.2
1851 Male, age 51, unknown 76.5
1889 Female, age 72, unknown 71.9
2699 Male, age 18, unknown 63.8
1941 Male, age 53, unknown 58.9
2241 Male, age 72, unknown 51.3
1916 Female, age 42, unknown 39.6
2665 Male, age 74, both hemispheres 39.1
Superior colliculus
nTPM: 80.9
1913 Female, age 42, unknown 154.9
1995 Male, age 72, unknown 131.5
1895 Male, age 76, right hemisphere 99.9
2587 Male, age 74, left hemisphere 85.2
2668 Female, age 75, unknown 80.6
1839 Male, age 51, unknown 78.0
1796 Male, age 53, unknown 59.2
2087 Female, age 72, unknown 48.8
2261 Male, age 18, unknown 36.0
2664 Male, age 75, both hemispheres 35.0
Ventral tegmental area
nTPM: 84.4
2223 Female, age 72, unknown 121.2
2410 Female, age 72, unknown 109.8
2021 Male, age 53, unknown 75.6
1942 Male, age 51, unknown 73.1
2218 Male, age 76, both hemispheres 69.9
1915 Female, age 42, unknown 56.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.0
Samples: 139

Max nTPM: 281.8
Min nTPM: 8.3
Std nTPM: 53.5
Median nTPM: 61.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 281.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 254.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 250.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 244.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 235.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 218.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 212.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 204.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 203.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 184.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 177.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 293.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 293.9
FF:10158-103A5 76 years, female 293.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 49.0
Min nTPM: 13.0
Sample A Female 49.0
Sample B Female 19.2
Sample C Male 13.0
Sample D Male 13.2
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 15.6
Min nTPM: 10.9
Sample B Female 15.6
Sample C Male 10.9
Sample D Male 13.0
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 34.9
Min nTPM: 14.6
Sample A Female 17.8
Sample B Female 14.6
Sample C Male 17.6
Sample D Male 34.9
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 20.9
Min nTPM: 17.8
Sample A Female 18.9
Sample B Female 17.8
Sample C Male 20.9
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.9
Samples: 4

Max nTPM: 56.3
Min nTPM: 50.5
Sample A Male 50.5
Sample B Male 50.7
Sample C Female 56.3
Sample D Female 54.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68637838 Antisense, RP_050126_01_G01, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.