BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:167.3 nTPM
HPA:167.3 nTPM
GTEx:36.6 nTPM
FANTOM5:173.0 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:38.9 nTPM
Allen mouse:1.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 167.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
2288 Male, age 75, left hemisphere 66.8
1854 Male, age 80, left hemisphere 37.2
1781 Male, age 74, unknown 36.9
2846 Female, age 79, unknown 36.4
2481 Female, age 94, left hemisphere 32.4
2290 Female, age 72, unknown 25.6
2289 Male, age 61, right hemisphere 25.4
1857 Female, age 85, left hemisphere 13.8
Claustrum
nTPM: 86.1
2292 Female, age 85, both hemispheres 158.5
1956 Male, age 74, unknown 113.2
2392 Female, age 94, both hemispheres 92.7
2198 Male, age 80, both hemispheres 73.4
2196 Female, age 79, unknown 73.0
2568 Male, age 61, both hemispheres 69.9
2491 Male, age 75, both hemispheres 67.4
2284 Female, age 91, both hemispheres 64.4
2645 Female, age 72, unknown 62.3
Globus pallidus, externus
nTPM: 149.2
2567 Female, age 72, unknown 206.7
2646 Male, age 61, right hemisphere 170.9
1996 Male, age 80, right hemisphere 139.5
2772 Female, age 79, unknown 117.7
2395 Male, age 75, both hemispheres 111.0
Globus pallidus, internus
nTPM: 167.3
2111 Female, age 85, right hemisphere 294.0
2566 Female, age 72, unknown 197.7
2778 Female, age 91, both hemispheres 195.8
1818 Male, age 74, unknown 146.9
2037 Male, age 80, right hemisphere 145.8
2287 Male, age 75, right hemisphere 121.4
2483 Female, age 94, right hemisphere 69.6
Nucleus accumbens
nTPM: 67.5
2391 Female, age 94, left hemisphere 149.1
2732 Male, age 80, right hemisphere 111.6
2698 Female, age 72, unknown 72.4
2286 Male, age 75, left hemisphere 53.2
1806 Female, age 85, left hemisphere 46.8
2824 Male, age 61, right hemisphere 45.4
1783 Male, age 74, unknown 44.4
1856 Female, age 91, right hemisphere 17.2
Nucleus basalis of Meynert
nTPM: 80.2
2569 Male, age 61, both hemispheres 138.7
2821 Male, age 75, both hemispheres 80.3
2393 Male, age 80, right hemisphere 53.2
2484 Female, age 94, left hemisphere 48.5
Nucleus of the diagonal band
nTPM: 18.9
1812 Female, age 91, both hemispheres 31.8
1979 Male, age 74, unknown 23.0
2029 Male, age 61, right hemisphere 19.7
2775 Male, age 80, right hemisphere 10.9
2195 Female, age 85, both hemispheres 9.0
Olfactory tubercle
nTPM: 21.5
1998 Female, age 91, both hemispheres 24.6
2856 Male, age 75, right hemisphere 21.8
2487 Female, age 94, left hemisphere 21.2
1846 Male, age 80, right hemisphere 18.4
Putamen
nTPM: 56.0
2647 Male, age 75, left hemisphere 80.9
2489 Female, age 72, unknown 77.7
1829 Male, age 74, unknown 65.3
2482 Female, age 94, left hemisphere 64.3
1937 Female, age 91, right hemisphere 52.5
2466 Female, age 79, unknown 38.0
1838 Male, age 80, right hemisphere 13.4
Septal nuclei
nTPM: 35.3
2394 Male, age 61, left hemisphere 86.3
2199 Male, age 80, right hemisphere 53.4
2059 Female, age 85, both hemispheres 37.2
2629 Female, age 94, right hemisphere 25.8
2009 Female, age 91, both hemispheres 24.9
2031 Female, age 72, unknown 13.1
1960 Male, age 74, unknown 6.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.7
Samples: 246

Max nTPM: 146.9
Min nTPM: 5.2
Std nTPM: 17.1
Median nTPM: 26.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 146.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 99.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 88.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 84.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 68.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 65.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 64.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 63.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 62.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 62.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 61.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.3
Samples: 246

Max nTPM: 145.2
Min nTPM: 2.3
Std nTPM: 18.8
Median nTPM: 14.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 145.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 134.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 123.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 101.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 87.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 75.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 74.3
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 59.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 59.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 57.4
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 53.9
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Brain - Putamen (basal ganglia)
Average nTPM: 36.6
Samples: 205

Max nTPM: 229.7
Min nTPM: 8.1
Std nTPM: 23.4
Median nTPM: 32.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 229.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 113.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 93.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 89.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 87.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 84.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 83.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 82.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 82.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 81.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 74.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.7
FF:10164-103B2 76 years, female 31.7
Globus pallidus
Scaled Tags Per Million: 173.0
FF:10161-103A8 76 years, female 203.9
FF:10175-103C4 60 years, female 142.0
Nucleus accumbens
Scaled Tags Per Million: 82.9
FF:10037-101F1 23-56 years, mixed 82.9
Putamen
Scaled Tags Per Million: 35.6
FF:10176-103C5 60 years, female 35.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.0
Sample C Male 4.3
Sample D Male 5.4
Putamen
nTPM: 14.0
Samples: 4

Max nTPM: 24.7
Min nTPM: 7.7
Sample A Female 24.7
Sample B Female 7.7
Sample C Male 8.1
Sample D Male 15.4
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 9.1
Min nTPM: 5.5
Sample A Female 6.6
Sample B Female 5.5
Sample C Male 7.8
Sample D Male 9.1
Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 9.7
Sample C Male 18.4
Sample D Male 13.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.9
Samples: 4

Max nTPM: 45.0
Min nTPM: 30.2
Sample A Male 41.7
Sample B Male 45.0
Sample C Female 38.7
Sample D Female 30.2
Septum
nTPM: 36.0
Samples: 4

Max nTPM: 50.2
Min nTPM: 26.1
Sample A Male 26.1
Sample B Male 30.5
Sample C Female 37.0
Sample D Female 50.2
Ventral forebrain
nTPM: 23.1
Samples: 4

Max nTPM: 27.1
Min nTPM: 21.5
Sample A Male 27.1
Sample B Male 21.6
Sample C Female 21.5
Sample D Female 22.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
68637838 Antisense, RP_050126_01_G01, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.6
68637838 Antisense, RP_050126_01_G01, Mouse strain C57BL/6J (56 days, male) 1.6

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