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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:949.6 nTPM
HPA:949.6 nTPM
GTEx:813.7 nTPM
FANTOM5:198.5 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:73.1 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 949.6
Sample id Sample description nTPM
Amygdala
nTPM: 949.6
2695 Female, age 67, right hemisphere 969.9
2514 Male, age 75, right hemisphere 964.9
2517 Female, age 94, left hemisphere 938.5
2814 Male, age 76, right hemisphere 937.5
1987 Female, age 91, left hemisphere 937.3
Basal amygdala
nTPM: 931.9
2827 Female, age 67, right hemisphere 949.0
2609 Male, age 75, right hemisphere 945.5
2110 Male, age 80, left hemisphere 939.2
2685 Female, age 94, left hemisphere 934.2
1955 Male, age 76, both hemispheres 916.3
2243 Female, age 91, right hemisphere 907.0
Central amygdala
nTPM: 946.1
2826 Female, age 94, left hemisphere 999.4
2515 Male, age 75, right hemisphere 951.9
1905 Male, age 76, both hemispheres 944.6
2701 Female, age 91, right hemisphere 917.8
2239 Male, age 80, left hemisphere 916.7
Corticomedial amygdala
nTPM: 927.4
2428 Male, age 75, right hemisphere 946.7
2829 Male, age 80, left hemisphere 943.4
2429 Female, age 94, left hemisphere 933.0
2240 Male, age 76, both hemispheres 916.7
2535 Female, age 67, right hemisphere 912.4
2242 Female, age 91, right hemisphere 912.2
Lateral amygdala
nTPM: 939.7
2516 Male, age 75, right hemisphere 975.1
2830 Female, age 67, right hemisphere 967.3
2534 Female, age 94, left hemisphere 946.9
1883 Male, age 76, both hemispheres 923.8
2256 Male, age 80, left hemisphere 912.7
2255 Female, age 91, right hemisphere 912.3
Stria terminalis, bed nucleus
nTPM: 920.6
1974 Female, age 91, both hemispheres 939.9
2486 Female, age 94, both hemispheres 912.7
2201 Male, age 74, unknown 909.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 813.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 813.7
Samples: 152

Max nTPM: 2849.8
Min nTPM: 319.5
Std nTPM: 325.5
Median nTPM: 737.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2849.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2358.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1978.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1719.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1460.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1399.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1343.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1328.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1317.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1253.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1241.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1216.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1202.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1194.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1173.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1115.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1100.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1092.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1084.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1043.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1040.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1035.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1024.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1019.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1009.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 992.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 989.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 984.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 976.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 971.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 968.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 964.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 946.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 945.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 937.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 930.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 921.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 915.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 914.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 910.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 907.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 900.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 895.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 892.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 889.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 885.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 880.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 877.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 877.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 874.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 873.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 868.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 853.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 851.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 845.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 843.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 840.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 839.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 838.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 817.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 812.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 803.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 794.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 792.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 786.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 784.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 784.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 781.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 768.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 766.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 763.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 750.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 750.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 749.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 740.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 739.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 735.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 732.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 730.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 727.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 720.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 714.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 714.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 712.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 711.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 705.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 705.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 703.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 702.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 701.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 696.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 693.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 686.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 673.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 667.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 667.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 666.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 666.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 663.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 659.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 659.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 657.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 657.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 655.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 651.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 650.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 647.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 642.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 641.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 638.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 635.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 630.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 629.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 620.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 619.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 613.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 608.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 608.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 607.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 605.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 600.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 598.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 597.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 592.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 592.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 586.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 584.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 574.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 564.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 564.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 561.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 558.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 550.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 547.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 532.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 529.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 528.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 525.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 519.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 503.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 503.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 499.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 492.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 485.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 482.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 480.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 459.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 453.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 443.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 425.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 395.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 319.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 198.5
FF:10151-102I7 76 years, female 198.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.1
Pig sample Sample description nTPM
Amygdala
nTPM: 33.1
Samples: 4

Max nTPM: 40.4
Min nTPM: 24.4
Sample A Female 40.4
Sample B Female 37.5
Sample C Male 30.1
Sample D Male 24.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.1
Samples: 4

Max nTPM: 82.3
Min nTPM: 67.4
Sample A Male 67.4
Sample B Male 68.9
Sample C Female 82.3
Sample D Female 73.7

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