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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:419.1 nTPM
GTEx:419.1 nTPM
FANTOM5:175.3 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:76.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 419.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 419.1
Samples: 105

Max nTPM: 632.7
Min nTPM: 268.5
Std nTPM: 65.0
Median nTPM:
218_1 71 years, female 632.7
35_1 74 years, female 629.4
452_1 88 years, female 585.0
384_1 83 years, male 576.8
379_1 60 years, male 551.5
237_1 82 years, male 545.2
120_1 70 years, female 528.8
153_1 70 years, female 516.9
394_1 75 years, female 513.1
396_1 62 years, male 502.7
375_1 74 years, female 499.8
377_1 82 years, female 490.7
99_1 64 years, male 477.4
145_1 84 years, male 476.7
376_1 75 years, female 474.1
347_1 72 years, male 469.9
308_1 70 years, female 469.4
137_1 83 years, male 468.2
352_1 62 years, male 465.6
526_1 61 years, male 463.2
506_1 65 years, male 462.0
315_1 62 years, female 459.9
350_1 84 years, female 457.9
349_1 83 years, male 457.3
6_1 73 years, female 455.7
491_1 89 years, female 455.5
355_1 70 years, female 454.3
163_1 78 years, male 454.1
322_1 76 years, male 453.5
354_1 81 years, female 450.3
353_1 82 years, female 448.8
447_1 81 years, male 444.8
4_1 88 years, female 443.3
17_1 71 years, male 443.3
320_1 89 years, female 442.9
351_1 91 years, male 435.6
246_1 77 years, male 434.3
319_1 81 years, male 433.4
389_1 86 years, female 433.0
243_1 75 years, male 430.4
126_1 63 years, male 430.1
466_1 57 years, female 429.9
177_1 74 years, male 426.8
415_1 77 years, female 425.4
495_1 57 years, female 422.5
405_1 91 years, male 421.2
142_1 61 years, female 420.9
321_1 62 years, female 420.6
348_1 84 years, male 420.5
172_1 72 years, female 418.5
115_1 83 years, male 415.9
217_1 76 years, male 414.7
501_1 88 years, male 414.3
41_1 94 years, female 414.0
251_1 78 years, male 412.9
117_1 61 years, male 411.2
386_1 76 years, male 409.3
139_1 64 years, female 409.0
317_1 60 years, male 406.7
189_1 76 years, male 405.0
173_1 67 years, male 404.8
119_1 70 years, female 404.1
356_1 87 years, female 402.1
109_1 81 years, female 400.3
414_1 84 years, female 398.3
162_1 79 years, female 397.2
291_1 76 years, male 396.6
264_1 73 years, female 396.4
307_1 66 years, female 395.1
518_1 75 years, female 395.0
18_1 88 years, male 393.0
413_1 59 years, female 386.1
254_1 77 years, female 385.3
2_1 77 years, female 384.4
32_1 67 years, male 377.9
89_1 63 years, male 377.4
335_1 73 years, female 375.5
503_1 68 years, male 374.7
490_1 67 years, female 374.2
229_1 69 years, female 372.4
265_1 87 years, male 370.9
468_1 89 years, male 369.1
43_1 64 years, female 368.8
42_1 85 years, male 366.3
314_1 67 years, male 365.5
81_1 67 years, male 363.9
288_1 66 years, female 363.0
517_1 88 years, male 362.1
286_1 68 years, female 360.0
311_1 78 years, male 357.1
295_1 61 years, female 351.1
324_1 76 years, male 350.9
406_1 79 years, male 347.3
318_1 68 years, male 344.8
9_1 66 years, female 343.7
480_1 63 years, male 343.1
404_1 82 years, female 342.2
266_1 85 years, male 334.9
292_1 71 years, male 332.4
313_1 79 years, female 321.3
499_1 55 years, female 313.5
316_1 62 years, male 313.4
425_1 59 years, female 312.8
149_1 88 years, male 312.1
293_1 68 years, female 268.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 175.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 175.3
FF:10030-101E3 24-65 years, mixed 175.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.4
Pig sample Sample description nTPM
Retina
nTPM: 18.4
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.8
Sample A Female 18.2
Sample B Female 21.0
Sample C Male 17.5
Sample D Male 16.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.4
Mouse sample Sample description nTPM
Retina
nTPM: 76.4
Samples: 4

Max nTPM: 97.1
Min nTPM: 62.5
Sample A Male 82.8
Sample B Male 63.1
Sample C Female 97.1
Sample D Female 62.5

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by the Knut & Alice Wallenberg Foundation.