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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:979.2 nTPM
HPA:979.2 nTPM
GTEx:559.3 nTPM
FANTOM5:228.6 Scaled Tags Per Million
Pig:38.3 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 979.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 949.7
1981 Female, age 72, midline 982.8
2565 Male, age 75, midline 953.2
2048 Male, age 55, midline 952.4
2194 Female, age 79, both hemispheres 932.4
2816 Male, age 47, midline 927.4
Cervical spinal cord, dorsal horn
nTPM: 957.3
2173 Female, age 72, unknown 1010.0
2069 Male, age 47, both hemispheres 977.3
2296 Male, age 66, both hemispheres 973.5
1877 Male, age 55, unknown 959.8
2297 Male, age 75, both hemispheres 916.5
2721 Male, age 90, both hemispheres 906.5
Cervical spinal cord, ventral horn
nTPM: 979.2
2480 Male, age 75, both hemispheres 1030.0
2098 Female, age 72, unknown 1004.3
2809 Male, age 90, both hemispheres 1002.9
2068 Male, age 55, unknown 967.0
2295 Male, age 66, both hemispheres 946.1
2820 Female, age 79, both hemispheres 925.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 559.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 559.3
Samples: 159

Max nTPM: 1004.0
Min nTPM: 293.3
Std nTPM: 135.6
Median nTPM: 540.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1004.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 996.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 972.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 899.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 883.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 876.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 817.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 793.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 791.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 780.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 773.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 762.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 758.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 752.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 750.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 744.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 738.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 735.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 731.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 717.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 713.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 712.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 711.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 711.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 708.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 699.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 696.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 674.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 672.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 666.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 664.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 660.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 659.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 647.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 644.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 641.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 640.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 637.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 635.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 634.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 630.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 626.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 622.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 622.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 620.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 620.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 617.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 616.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 616.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 604.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 603.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 601.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 597.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 594.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 591.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 591.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 587.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 584.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 583.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 581.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 580.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 577.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 575.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 572.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 571.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 570.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 565.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 557.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 556.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 555.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 555.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 554.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 552.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 551.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 551.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 550.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 546.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 546.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 542.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 540.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 540.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 539.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 536.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 535.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 534.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 532.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 527.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 526.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 526.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 521.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 521.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 519.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 519.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 517.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 516.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 515.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 514.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 512.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 512.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 507.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 506.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 503.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 501.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 501.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 499.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 498.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 497.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 495.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 492.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 492.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 491.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 489.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 480.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 477.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 475.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 475.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 466.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 464.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 460.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 459.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 457.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 455.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 450.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 448.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 447.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 439.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 438.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 436.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 433.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 431.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 427.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 423.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 420.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 418.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 417.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 416.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 416.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 413.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 412.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 412.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 412.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 410.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 405.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 399.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 399.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 394.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 394.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 393.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 391.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 386.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 385.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 383.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 383.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 373.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 350.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 340.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 317.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 295.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 293.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 228.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 228.6
FF:10181-103D1 60 years, female 317.0
FF:10159-103A6 76 years, female 140.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 35.7
Samples: 4

Max nTPM: 41.4
Min nTPM: 31.8
Sample A Female 33.2
Sample B Female 36.4
Sample C Male 41.4
Sample D Male 31.8
Ventral spinal cord
nTPM: 38.3
Samples: 4

Max nTPM: 42.0
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 41.3
Sample C Male 42.0
Sample D Male 35.8

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