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PCBP2
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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:232.8 nTPM
HPA:232.8 nTPM
FANTOM5:830.5 Scaled Tags Per Million
Pig:241.5 nTPM
Mouse:313.7 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 232.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 217.6
2301 Female, age 85, both hemispheres 251.0
2188 Female, age 91, both hemispheres 209.5
2090 Male, age 80, both hemispheres 206.5
1984 Male, age 76, both hemispheres 203.5
Area postrema
nTPM: 217.8
2306 Male, age 80, both hemispheres 245.1
2799 Male, age 61, both hemispheres 208.5
2054 Male, age 76, both hemispheres 199.9
Cuneate nuclei
nTPM: 204.8
2376 Male, age 61, both hemispheres 210.6
2381 Male, age 80, both hemispheres 208.1
2131 Male, age 76, both hemispheres 195.8
Dorsal cochlear nucleus
nTPM: 207.4
2802 Male, age 74, right hemisphere 217.5
2187 Female, age 91, both hemispheres 212.1
2378 Male, age 80, both hemispheres 211.7
2370 Male, age 61, both hemispheres 199.8
2058 Male, age 76, both hemispheres 195.8
Dorsal medullary reticular nucleus
nTPM: 202.0
2040 Female, age 85, both hemispheres 212.9
2373 Male, age 61, both hemispheres 207.7
2088 Male, age 76, both hemispheres 185.4
Dorsal motor vagal complex
nTPM: 203.8
2000 Male, age 74, unknown 220.7
2133 Female, age 91, both hemispheres 209.7
2185 Male, age 76, both hemispheres 205.3
2807 Female, age 85, both hemispheres 204.5
2813 Female, age 72, unknown 203.8
2844 Male, age 55, unknown 201.2
2643 Male, age 74, both hemispheres 199.5
2797 Male, age 61, both hemispheres 186.1
Dorsal tegmental nucleus
nTPM: 214.8
2083 Male, age 80, both hemispheres 227.0
2358 Male, age 61, both hemispheres 224.0
2326 Male, age 74, both hemispheres 209.7
1936 Male, age 76, left hemisphere 198.5
Dorsolateral tegmental area
nTPM: 211.6
2337 Male, age 61, both hemispheres 239.9
2654 Male, age 80, both hemispheres 221.5
2751 Female, age 85, both hemispheres 206.1
2360 Male, age 74, both hemispheres 199.6
2141 Male, age 76, both hemispheres 190.8
Gigantocellular reticular nuclei, medullary
nTPM: 212.9
2314 Male, age 61, both hemispheres 230.1
2310 Male, age 80, both hemispheres 224.8
1876 Female, age 85, both hemispheres 211.9
2022 Male, age 76, right hemisphere 206.8
2462 Male, age 74, both hemispheres 202.6
2387 Female, age 91, both hemispheres 201.2
Gigantocellular reticular nuclei, pars
nTPM: 212.5
2168 Male, age 76, both hemispheres 225.9
2330 Male, age 80, both hemispheres 215.6
2084 Female, age 85, both hemispheres 209.2
2336 Male, age 61, both hemispheres 207.7
2706 Male, age 80, both hemispheres 204.0
Inferior olive
nTPM: 221.4
2563 Male, age 74, both hemispheres 243.3
2628 Female, age 91, both hemispheres 236.4
2178 Male, age 61, both hemispheres 214.9
2085 Female, age 85, both hemispheres 209.3
2379 Male, age 80, both hemispheres 203.3
Kolliker-Fuse nucleus
nTPM: 229.8
2315 Male, age 76, right hemisphere 235.6
2793 Female, age 91, left hemisphere 232.1
2163 Male, age 80, both hemispheres 221.7
Lateral lemniscal nuclei
nTPM: 213.9
2169 Male, age 76, both hemispheres 224.5
2746 Female, age 85, left hemisphere 218.7
2036 Male, age 80, both hemispheres 216.9
2320 Female, age 91, left hemisphere 211.6
2453 Male, age 74, right hemisphere 198.0
Lateral medullary reticular nucleus
nTPM: 221.1
2305 Male, age 74, both hemispheres 242.6
2852 Male, age 80, both hemispheres 220.9
2374 Male, age 61, both hemispheres 219.2
2044 Male, age 76, both hemispheres 219.1
2190 Female, age 85, both hemispheres 213.6
2804 Female, age 91, both hemispheres 211.4
Lateral parabrachial nucleus
nTPM: 220.9
2792 Male, age 76, both hemispheres 236.9
2139 Female, age 85, right hemisphere 228.5
2013 Male, age 80, both hemispheres 218.4
2790 Male, age 61, both hemispheres 199.7
Lateral vestibular nucleus
nTPM: 232.8
2184 Male, age 76, both hemispheres 233.1
2311 Male, age 80, both hemispheres 232.5
Locus coeruleus
nTPM: 209.4
2317 Female, age 72, unknown 217.8
2014 Male, age 55, unknown 216.6
2788 Male, age 74, unknown 213.1
2123 Female, age 91, both hemispheres 212.2
2162 Male, age 80, both hemispheres 209.2
2720 Male, age 74, both hemispheres 208.0
1980 Male, age 76, both hemispheres 188.8
Medial olivary nucleus
nTPM: 226.2
2851 Male, age 80, both hemispheres 232.4
1943 Male, age 61, both hemispheres 229.3
1962 Male, age 76, both hemispheres 221.7
2138 Female, age 91, both hemispheres 221.3
Medial parabrachial nucleus
nTPM: 215.8
2170 Female, age 91, both hemispheres 235.5
2854 Male, age 80, both hemispheres 220.8
2156 Male, age 61, both hemispheres 215.5
2786 Male, age 76, both hemispheres 205.0
2463 Female, age 85, right hemisphere 202.3
Medial periolivary nuclei
nTPM: 211.7
2171 Female, age 85, both hemispheres 228.5
2063 Male, age 76, both hemispheres 224.6
2791 Male, age 74, right hemisphere 212.2
2081 Male, age 80, both hemispheres 198.0
2458 Female, age 91, both hemispheres 195.2
Medial vestibular nucleus
nTPM: 224.7
2624 Male, age 61, both hemispheres 253.8
2801 Male, age 74, both hemispheres 237.1
2803 Female, age 91, both hemispheres 229.9
2134 Male, age 76, both hemispheres 215.2
2093 Male, age 80, both hemispheres 210.1
2743 Female, age 85, both hemispheres 202.0
Motor facial nucleus
nTPM: 216.9
2697 Female, age 85, both hemispheres 228.5
2062 Male, age 76, both hemispheres 224.7
2327 Male, age 80, both hemispheres 217.3
2365 Male, age 74, right hemisphere 217.1
2795 Female, age 91, both hemispheres 211.6
2126 Male, age 61, both hemispheres 202.2
Motor hypoglossal nucleus
nTPM: 205.0
2182 Male, age 80, both hemispheres 224.9
2125 Female, age 91, both hemispheres 213.6
2132 Female, age 85, both hemispheres 211.4
2461 Male, age 61, both hemispheres 202.1
2277 Male, age 76, both hemispheres 173.1
Motor trigeminal nucleus
nTPM: 205.4
2335 Male, age 61, both hemispheres 213.5
2321 Female, age 91, both hemispheres 211.2
2309 Male, age 76, both hemispheres 203.7
2560 Male, age 74, both hemispheres 199.7
2079 Male, age 80, both hemispheres 199.1
Nuclei of the trapezoid body
nTPM: 213.3
1983 Male, age 76, both hemispheres 236.2
2159 Male, age 61, both hemispheres 225.2
2735 Female, age 85, both hemispheres 214.8
2166 Male, age 80, both hemispheres 197.5
2368 Female, age 91, both hemispheres 192.7
Nucleus ambiguus
nTPM: 198.7
2071 Male, age 76, both hemispheres 213.3
2096 Female, age 85, both hemispheres 184.0
Nucleus cuneatus
nTPM: 201.8
2564 Male, age 74, both hemispheres 216.7
2380 Male, age 80, both hemispheres 211.4
2808 Female, age 85, both hemispheres 209.5
2562 Male, age 61, both hemispheres 192.7
2805 Female, age 91, both hemispheres 191.2
2100 Male, age 76, both hemispheres 189.5
Nucleus gracilis
nTPM: 220.2
2627 Male, age 74, both hemispheres 225.2
2382 Male, age 80, both hemispheres 219.1
2299 Female, age 85, both hemispheres 216.3
Nucleus raphe magnus
nTPM: 218.3
2160 Male, age 61, both hemispheres 243.6
2172 Female, age 85, both hemispheres 230.0
2051 Male, age 76, both hemispheres 221.8
2328 Male, age 80, both hemispheres 215.7
2455 Male, age 74, both hemispheres 201.1
2459 Female, age 91, both hemispheres 197.7
Nucleus raphe obscurus
nTPM: 215.6
2142 Male, age 76, midline 222.1
2845 Female, age 85, midline 217.1
2800 Male, age 61, midline 207.5
Nucleus raphe pallidus
nTPM: 216.1
1924 Male, age 61, midline 226.4
2183 Male, age 80, midline 216.1
2145 Male, age 76, midline 205.8
Nucleus tractus solitarii
nTPM: 201.5
2191 Female, age 85, both hemispheres 210.7
2307 Male, age 80, both hemispheres 202.6
2144 Female, age 91, right hemisphere 201.0
2656 Male, age 76, both hemispheres 191.6
Paramedian reticular nucleus
nTPM: 212.0
2050 Female, age 85, both hemispheres 229.8
2313 Male, age 61, both hemispheres 208.3
2052 Male, age 76, both hemispheres 206.0
2057 Male, age 80, both hemispheres 203.9
Parvicellular reticular nuclei
nTPM: 200.5
2095 Male, age 76, both hemispheres 213.3
2119 Male, age 80, both hemispheres 203.9
2558 Male, age 74, both hemispheres 184.3
Parvicellular reticular nuclei, medullary
nTPM: 212.7
2189 Female, age 91, both hemispheres 220.7
2091 Female, age 85, both hemispheres 213.8
2181 Male, age 80, left hemisphere 203.6
Peritrigeminal nucleus
nTPM: 223.6
2067 Female, age 85, both hemispheres 226.8
2136 Male, age 76, both hemispheres 224.7
2179 Male, age 61, both hemispheres 219.4
Pontine nuclei
nTPM: 224.2
1863 Male, age 55, unknown 256.4
2787 Female, age 85, both hemispheres 255.8
2319 Female, age 91, both hemispheres 220.2
2727 Male, age 61, right hemisphere 220.2
1968 Male, age 76, left hemisphere 218.1
2109 Female, age 72, unknown 213.2
2115 Male, age 80, left hemisphere 208.0
2454 Male, age 74, left hemisphere 201.6
Pontine raphe nucleus
nTPM: 208.4
2122 Female, age 85, midline 208.9
2853 Male, age 76, midline 207.9
Posteroventral cochlear nucleus
nTPM: 208.6
2135 Female, age 91, both hemispheres 217.8
2341 Male, age 80, both hemispheres 215.5
2752 Female, age 85, both hemispheres 208.1
2070 Male, age 76, both hemispheres 205.8
2371 Male, age 61, both hemispheres 195.7
Prepositus hypoglossal nucleus
nTPM: 208.6
2855 Female, age 85, right hemisphere 209.9
2086 Male, age 80, both hemispheres 207.3
Principal sensory trigeminal nucleus
nTPM: 218.4
2158 Male, age 61, both hemispheres 234.7
2324 Male, age 76, both hemispheres 230.4
2367 Female, age 91, left hemisphere 205.0
2008 Male, age 80, left hemisphere 203.5
Reticular pontine nucleus, caudal
nTPM: 214.2
2092 Male, age 76, both hemispheres 230.2
2332 Male, age 80, right hemisphere 224.0
2457 Female, age 91, both hemispheres 201.4
2559 Male, age 74, both hemispheres 200.9
Reticular pontine nucleus, oral
nTPM: 212.5
1939 Male, age 80, both hemispheres 220.3
2366 Female, age 91, both hemispheres 214.5
2012 Female, age 85, both hemispheres 213.1
2167 Male, age 76, both hemispheres 209.1
2361 Male, age 74, both hemispheres 205.5
Reticulotegmental nucleus
nTPM: 214.4
2333 Male, age 80, both hemispheres 219.2
2322 Female, age 91, both hemispheres 215.8
2325 Male, age 76, both hemispheres 214.4
2452 Male, age 74, both hemispheres 208.2
Spinal trigeminal nucleus, caudal
nTPM: 216.0
2390 Female, age 91, both hemispheres 236.9
2312 Male, age 61, both hemispheres 223.9
2308 Male, age 80, both hemispheres 213.1
2642 Male, age 74, both hemispheres 208.7
2447 Male, age 76, both hemispheres 197.5
Spinal trigeminal nucleus, interpolar
nTPM: 228.2
2625 Male, age 61, both hemispheres 278.7
2389 Female, age 91, both hemispheres 227.1
2066 Male, age 76, right hemisphere 220.2
2033 Male, age 80, both hemispheres 212.5
2386 Female, age 85, both hemispheres 202.6
Spinal trigeminal nucleus, oral
nTPM: 209.6
2164 Male, age 80, both hemispheres 224.9
2737 Female, age 85, both hemispheres 207.7
1978 Male, age 76, both hemispheres 196.3
Spinal vestibular nucleus
nTPM: 210.2
2806 Female, age 85, both hemispheres 220.4
2796 Male, age 61, both hemispheres 218.9
2748 Male, age 76, both hemispheres 216.5
2186 Female, age 91, both hemispheres 212.0
2780 Male, age 80, both hemispheres 208.8
2384 Male, age 74, both hemispheres 184.5
Subcoeruleus area
nTPM: 205.1
2323 Female, age 91, left hemisphere 217.8
2369 Female, age 85, left hemisphere 212.4
1958 Male, age 80, both hemispheres 209.2
2089 Male, age 76, left hemisphere 193.3
2451 Male, age 74, both hemispheres 192.8
Superior olive
nTPM: 218.6
1875 Female, age 85, both hemispheres 231.3
2020 Male, age 76, both hemispheres 217.8
2329 Male, age 80, right hemisphere 216.4
2364 Male, age 74, right hemisphere 216.0
2561 Female, age 91, both hemispheres 211.5
Superior vestibular nucleus
nTPM: 214.0
2383 Male, age 74, both hemispheres 222.9
2015 Male, age 80, both hemispheres 211.1
2061 Male, age 76, both hemispheres 208.0
Ventral medullary reticular nucleus
nTPM: 205.1
2060 Male, age 76, both hemispheres 207.6
2372 Male, age 61, both hemispheres 202.6
Ventral periolivary nuclei
nTPM: 214.4
2023 Male, age 76, both hemispheres 225.5
2130 Female, age 85, both hemispheres 214.0
2165 Male, age 80, both hemispheres 213.0
2794 Female, age 91, left hemisphere 205.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 215.1
1986 Male, age 76, both hemispheres 224.6
2302 Female, age 91, both hemispheres 221.1
2180 Male, age 61, both hemispheres 216.4
2741 Female, age 85, both hemispheres 210.3
2118 Male, age 80, both hemispheres 203.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 210.1
2840 Female, age 85, both hemispheres 225.4
2161 Male, age 80, both hemispheres 215.5
1959 Male, age 76, both hemispheres 215.4
2359 Male, age 61, both hemispheres 210.6
2456 Female, age 91, both hemispheres 199.1
2449 Male, age 74, both hemispheres 195.0

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 830.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 830.5
FF:10165-103B3 76 years, female 981.7
FF:10182-103D2 60 years, female 679.2
Medulla oblongata
Scaled Tags Per Million: 768.8
FF:10155-103A2 76 years, female 1144.2
FF:10174-103C3 60 years, female 746.5
FF:10038-101F2 18-64 years, mixed 415.5
Pons
Scaled Tags Per Million: 456.0
FF:10033-101E6 18-54 years, mixed 456.0

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 241.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 237.0
Samples: 4

Max nTPM: 257.4
Min nTPM: 218.7
Sample A Female 218.7
Sample B Female 226.1
Sample C Male 257.4
Sample D Male 245.6
Pons
nTPM: 241.5
Samples: 4

Max nTPM: 282.0
Min nTPM: 184.4
Sample A Female 241.1
Sample B Female 184.4
Sample C Male 258.3
Sample D Male 282.0

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 313.7
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 313.7
Samples: 4

Max nTPM: 328.8
Min nTPM: 300.4
Sample A Male 306.1
Sample B Male 300.4
Sample C Female 328.8
Sample D Female 319.6

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