MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:399.7 nTPM
HPA:399.7 nTPM
GTEx:541.6 nTPM
FANTOM5:17.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 399.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 383.5
2219 Male, age 76, both hemispheres 415.2
2666 Male, age 74, left hemisphere 396.3
1870 Female, age 42, unknown 387.7
2586 Male, age 75, left hemisphere 381.8
1833 Male, age 53, unknown 379.8
2828 Female, age 72, unknown 376.9
1827 Male, age 72, unknown 375.7
1830 Male, age 51, unknown 375.3
2411 Female, age 72, unknown 375.0
2019 Male, age 18, unknown 371.6
Dorsal raphe nucleus
nTPM: 376.7
1828 Male, age 53, unknown 381.3
2750 Male, age 76, both hemispheres 378.3
2298 Female, age 72, unknown 376.0
2047 Male, age 72, unknown 375.2
2016 Female, age 72, unknown 372.4
Inferior colliculus
nTPM: 382.7
2849 Male, age 72, unknown 396.7
1890 Male, age 53, unknown 387.4
1848 Female, age 42, unknown 374.8
2097 Female, age 72, unknown 372.0
Median raphe nucleus
nTPM: 399.7
2220 Male, age 76, midline 399.7
Pedunculopontine tegmental nucleus
nTPM: 394.5
2338 Male, age 61, both hemispheres 417.6
2334 Male, age 80, both hemispheres 388.5
1921 Female, age 85, both hemispheres 377.4
Periaquaductal grey, anterior
nTPM: 376.3
2502 Female, age 75, unknown 376.6
1795 Male, age 51, unknown 376.1
1947 Male, age 18, unknown 376.1
Periaquaductal grey, dorsal
nTPM: 383.9
2850 Male, age 76, both hemispheres 400.5
1840 Male, age 53, unknown 379.5
1831 Male, age 72, unknown 377.9
2464 Female, age 72, unknown 377.6
Periaquaductal grey, lateral
nTPM: 370.9
2053 Male, age 18, unknown 374.4
2140 Male, age 76, both hemispheres 371.6
2272 Male, age 74, both hemispheres 366.8
Pretectal area
nTPM: 378.2
2667 Female, age 75, unknown 391.5
1816 Male, age 51, unknown 383.4
1944 Female, age 72, unknown 380.5
1815 Male, age 53, unknown 379.7
1817 Female, age 42, unknown 379.2
2825 Male, age 18, unknown 379.0
2224 Female, age 72, unknown 378.5
2007 Male, age 72, unknown 377.7
2407 Male, age 75, both hemispheres 376.1
2316 Male, age 76, right hemisphere 368.2
2273 Male, age 74, both hemispheres 366.2
Red nucleus
nTPM: 383.8
2503 Female, age 72, unknown 398.0
1865 Male, age 51, unknown 387.9
2725 Female, age 75, unknown 387.7
1904 Male, age 53, unknown 386.4
1954 Female, age 42, unknown 383.6
2584 Male, age 75, left hemisphere 383.0
1821 Female, age 72, unknown 382.5
2769 Male, age 72, unknown 380.8
2823 Male, age 76, right hemisphere 380.4
2227 Male, age 72, unknown 380.2
2785 Male, age 18, unknown 378.8
2588 Male, age 74, left hemisphere 376.0
Substantia nigra
nTPM: 387.5
2699 Male, age 18, unknown 415.0
2665 Male, age 74, both hemispheres 397.7
2241 Male, age 72, unknown 392.2
1916 Female, age 42, unknown 390.6
1851 Male, age 51, unknown 386.6
2409 Female, age 72, unknown 382.0
1941 Male, age 53, unknown 381.1
1889 Female, age 72, unknown 379.9
2583 Male, age 75, right hemisphere 377.6
2590 Female, age 75, unknown 372.0
Superior colliculus
nTPM: 379.2
2587 Male, age 74, left hemisphere 383.9
1796 Male, age 53, unknown 382.6
1913 Female, age 42, unknown 382.3
2664 Male, age 75, both hemispheres 381.9
1895 Male, age 76, right hemisphere 380.8
1995 Male, age 72, unknown 379.5
2668 Female, age 75, unknown 377.2
1839 Male, age 51, unknown 376.3
2087 Female, age 72, unknown 375.4
2261 Male, age 18, unknown 371.9
Ventral tegmental area
nTPM: 384.3
2218 Male, age 76, both hemispheres 397.0
1915 Female, age 42, unknown 392.2
2223 Female, age 72, unknown 387.6
1942 Male, age 51, unknown 382.5
2021 Male, age 53, unknown 373.8
2410 Female, age 72, unknown 373.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 541.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 541.6
Samples: 139

Max nTPM: 1695.7
Min nTPM: 157.7
Std nTPM: 300.4
Median nTPM: 490.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1695.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1694.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1439.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1328.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1165.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1146.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1136.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1127.0
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1115.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1109.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 960.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.1
FF:10158-103A5 76 years, female 17.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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