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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:487.7 nTPM
HPA:487.7 nTPM
GTEx:435.8 nTPM
FANTOM5:684.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA004426Antibody CAB004647
Glandular cells HighHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 487.7
overview
Male, age 65
Small intestine sample 232
nTPM: 452.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 484.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 527.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 485.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 435.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 435.8
Samples: 187

Max nTPM: 717.3
Min nTPM: 230.3
Std nTPM: 95.3
Median nTPM: 428.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 717.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 686.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 670.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 645.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 642.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 639.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 611.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 608.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 603.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 598.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 591.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 585.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 582.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 577.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 577.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 576.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 573.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 572.6
GTEX-1192X-2526-SM-59868 50-59 years, male 568.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 566.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 565.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 560.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 560.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 553.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 551.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 548.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 539.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 538.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 538.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 536.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 535.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 533.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 530.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 529.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 526.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 526.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 525.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 521.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 520.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 520.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 518.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 517.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 513.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 513.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 513.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 513.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 510.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 509.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 509.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 509.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 503.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 497.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 497.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 495.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 486.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 484.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 483.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 482.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 479.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 475.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 475.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 474.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 470.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 466.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 463.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 463.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 463.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 461.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 460.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 460.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 458.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 458.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 456.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 456.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 455.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 455.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 452.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 451.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 451.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 448.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 446.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 446.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 442.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 442.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 442.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 441.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 440.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 439.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 437.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 436.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 433.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 430.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 430.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 428.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 428.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 427.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 426.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 420.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 418.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 416.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 414.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 413.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 410.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 410.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 409.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 409.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 408.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 407.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 406.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 403.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 399.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 392.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 391.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 389.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 386.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 386.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 385.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 384.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 384.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 383.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 380.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 379.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 378.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 378.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 377.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 376.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 372.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 372.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 371.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 371.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 371.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 370.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 370.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 368.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 366.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 366.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 364.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 362.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 362.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 362.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 359.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 358.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 358.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 358.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 353.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 353.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 352.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 352.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 352.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 352.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 350.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 350.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 349.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 348.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 348.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 346.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 340.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 337.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 337.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 336.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 334.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 333.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 332.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 331.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 330.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 328.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 327.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 327.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 323.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 316.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 314.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 312.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 312.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 309.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 309.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 308.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 307.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 306.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 305.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 303.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 302.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 273.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 269.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 263.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 260.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 260.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 230.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 684.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 684.0
FF:10024-101D6 15,40,85 years, mixed 684.0

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