MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:894.0 nTPM
HPA:894.0 nTPM
GTEx:741.3 nTPM
FANTOM5:1370.0 Scaled Tags Per Million
Pig:685.0 nTPM
Mouse:1056.7 nTPM
Allen mouse:18.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 894.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 832.7
2666 Male, age 74, left hemisphere 1067.5
1827 Male, age 72, unknown 888.6
2019 Male, age 18, unknown 880.8
2586 Male, age 75, left hemisphere 852.0
2828 Female, age 72, unknown 831.6
2411 Female, age 72, unknown 829.2
1870 Female, age 42, unknown 826.5
1833 Male, age 53, unknown 759.0
1830 Male, age 51, unknown 755.8
2219 Male, age 76, both hemispheres 636.0
Dorsal raphe nucleus
nTPM: 882.9
2298 Female, age 72, unknown 1053.0
2016 Female, age 72, unknown 892.7
1828 Male, age 53, unknown 875.8
2047 Male, age 72, unknown 851.3
2750 Male, age 76, both hemispheres 741.6
Inferior colliculus
nTPM: 803.3
2097 Female, age 72, unknown 887.9
1848 Female, age 42, unknown 796.7
1890 Male, age 53, unknown 777.7
2849 Male, age 72, unknown 750.7
Median raphe nucleus
nTPM: 761.0
2220 Male, age 76, midline 761.0
Pedunculopontine tegmental nucleus
nTPM: 800.3
2338 Male, age 61, both hemispheres 897.0
1921 Female, age 85, both hemispheres 759.0
2334 Male, age 80, both hemispheres 744.8
Periaquaductal grey, anterior
nTPM: 863.3
1947 Male, age 18, unknown 933.9
1795 Male, age 51, unknown 858.4
2502 Female, age 75, unknown 797.4
Periaquaductal grey, dorsal
nTPM: 832.6
1840 Male, age 53, unknown 892.8
2850 Male, age 76, both hemispheres 851.9
1831 Male, age 72, unknown 836.8
2464 Female, age 72, unknown 749.0
Periaquaductal grey, lateral
nTPM: 872.4
2272 Male, age 74, both hemispheres 961.0
2140 Male, age 76, both hemispheres 847.5
2053 Male, age 18, unknown 808.7
Pretectal area
nTPM: 894.0
2273 Male, age 74, both hemispheres 1089.4
1817 Female, age 42, unknown 961.5
1944 Female, age 72, unknown 961.4
1816 Male, age 51, unknown 928.1
2007 Male, age 72, unknown 917.6
2667 Female, age 75, unknown 913.1
2224 Female, age 72, unknown 892.9
1815 Male, age 53, unknown 889.0
2825 Male, age 18, unknown 803.1
2407 Male, age 75, both hemispheres 746.9
2316 Male, age 76, right hemisphere 731.0
Red nucleus
nTPM: 794.5
1821 Female, age 72, unknown 913.1
2725 Female, age 75, unknown 901.2
2785 Male, age 18, unknown 829.1
2503 Female, age 72, unknown 825.3
1954 Female, age 42, unknown 808.4
1865 Male, age 51, unknown 787.1
1904 Male, age 53, unknown 778.5
2769 Male, age 72, unknown 765.1
2584 Male, age 75, left hemisphere 763.5
2227 Male, age 72, unknown 750.6
2823 Male, age 76, right hemisphere 719.2
2588 Male, age 74, left hemisphere 693.3
Substantia nigra
nTPM: 888.3
1916 Female, age 42, unknown 1089.0
1851 Male, age 51, unknown 998.9
1889 Female, age 72, unknown 905.1
1941 Male, age 53, unknown 889.2
2583 Male, age 75, right hemisphere 885.3
2241 Male, age 72, unknown 862.7
2590 Female, age 75, unknown 859.7
2409 Female, age 72, unknown 838.0
2699 Male, age 18, unknown 833.2
2665 Male, age 74, both hemispheres 721.7
Superior colliculus
nTPM: 828.6
1796 Male, age 53, unknown 911.4
1995 Male, age 72, unknown 903.1
2087 Female, age 72, unknown 879.7
2261 Male, age 18, unknown 854.2
1913 Female, age 42, unknown 829.1
2587 Male, age 74, left hemisphere 828.9
1839 Male, age 51, unknown 784.7
2668 Female, age 75, unknown 781.4
2664 Male, age 75, both hemispheres 762.5
1895 Male, age 76, right hemisphere 751.6
Ventral tegmental area
nTPM: 872.8
1915 Female, age 42, unknown 1030.7
2410 Female, age 72, unknown 929.7
1942 Male, age 51, unknown 853.5
2021 Male, age 53, unknown 825.5
2223 Female, age 72, unknown 808.1
2218 Male, age 76, both hemispheres 789.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 741.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 741.3
Samples: 139

Max nTPM: 1495.1
Min nTPM: 397.2
Std nTPM: 209.6
Median nTPM: 718.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1495.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1336.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1282.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1262.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1206.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1153.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1079.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1076.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1076.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1067.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1049.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1370.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1370.0
FF:10158-103A5 76 years, female 1370.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 685.0
Pig sample Sample description nTPM
Midbrain
nTPM: 685.0
Samples: 4

Max nTPM: 1157.1
Min nTPM: 443.7
Sample A Female 1157.1
Sample B Female 493.7
Sample C Male 645.5
Sample D Male 443.7
Periaqueductal gray
nTPM: 625.4
Samples: 3

Max nTPM: 756.1
Min nTPM: 545.5
Sample B Female 574.5
Sample C Male 756.1
Sample D Male 545.5
Substantia nigra
nTPM: 663.2
Samples: 4

Max nTPM: 811.3
Min nTPM: 544.6
Sample A Female 811.3
Sample B Female 544.6
Sample C Male 712.5
Sample D Male 584.3
Superior colliculi
nTPM: 632.1
Samples: 4

Max nTPM: 681.0
Min nTPM: 560.5
Sample A Female 681.0
Sample B Female 627.3
Sample C Male 659.7
Sample D Male 560.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1056.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1056.7
Samples: 4

Max nTPM: 1075.2
Min nTPM: 1045.6
Sample A Male 1051.4
Sample B Male 1045.6
Sample C Female 1054.7
Sample D Female 1075.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.1
70919346 Antisense, RP_050713_01_B06, Mouse strain C57BL/6J (56 days, male) 22.0
846 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 14.2
847 Antisense, RP_Baylor_102983, Mouse strain C57BL/6J (56 days, male) 12.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.