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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:30812.9 nTPM
HPA:30812.9 nTPM
FANTOM5:21790.9 Scaled Tags Per Million
Pig:16146.9 nTPM
Allen mouse:17.6 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 30812.9
Sample id Sample description nTPM
Area postrema
nTPM: 22284.1
2799 Male, age 61, both hemispheres 29191.5
2306 Male, age 80, both hemispheres 23638.9
2054 Male, age 76, both hemispheres 14021.9
Cuneate nuclei
nTPM: 25182.1
2381 Male, age 80, both hemispheres 28863.9
2376 Male, age 61, both hemispheres 26384.5
2131 Male, age 76, both hemispheres 20297.9
Dorsal medullary reticular nucleus
nTPM: 21784.0
2373 Male, age 61, both hemispheres 23904.1
2088 Male, age 76, both hemispheres 23015.1
2040 Female, age 85, both hemispheres 18432.8
Dorsal motor vagal complex
nTPM: 21512.3
2797 Male, age 61, both hemispheres 46630.8
2807 Female, age 85, both hemispheres 22706.0
2185 Male, age 76, both hemispheres 21708.5
2643 Male, age 74, both hemispheres 18282.8
2000 Male, age 74, unknown 16426.3
2844 Male, age 55, unknown 16342.6
2133 Female, age 91, both hemispheres 15632.6
2813 Female, age 72, unknown 14369.1
Gigantocellular reticular nuclei, medullary
nTPM: 21247.6
2314 Male, age 61, both hemispheres 32299.8
2387 Female, age 91, both hemispheres 24112.1
2310 Male, age 80, both hemispheres 23287.6
1876 Female, age 85, both hemispheres 19174.1
2022 Male, age 76, right hemisphere 15327.9
2462 Male, age 74, both hemispheres 13284.2
Gigantocellular reticular nuclei, pars
nTPM: 21839.2
2330 Male, age 80, both hemispheres 24893.6
2706 Male, age 80, both hemispheres 24342.4
2336 Male, age 61, both hemispheres 23106.9
2084 Female, age 85, both hemispheres 20218.8
2168 Male, age 76, both hemispheres 16634.3
Inferior olive
nTPM: 22411.7
2628 Female, age 91, both hemispheres 27187.0
2379 Male, age 80, both hemispheres 24238.1
2178 Male, age 61, both hemispheres 22365.5
2085 Female, age 85, both hemispheres 21151.2
2563 Male, age 74, both hemispheres 17116.7
Lateral medullary reticular nucleus
nTPM: 22667.1
2852 Male, age 80, both hemispheres 25063.4
2804 Female, age 91, both hemispheres 25003.5
2374 Male, age 61, both hemispheres 24314.9
2190 Female, age 85, both hemispheres 22363.0
2305 Male, age 74, both hemispheres 19868.6
2044 Male, age 76, both hemispheres 19389.6
Medial vestibular nucleus
nTPM: 19381.8
2803 Female, age 91, both hemispheres 24576.6
2624 Male, age 61, both hemispheres 24496.1
2093 Male, age 80, both hemispheres 20807.8
2801 Male, age 74, both hemispheres 18457.7
2743 Female, age 85, both hemispheres 15460.1
2134 Male, age 76, both hemispheres 12492.6
Motor hypoglossal nucleus
nTPM: 20208.3
2182 Male, age 80, both hemispheres 25936.9
2132 Female, age 85, both hemispheres 23709.3
2125 Female, age 91, both hemispheres 21854.2
2461 Male, age 61, both hemispheres 17399.1
2277 Male, age 76, both hemispheres 12142.2
Nucleus ambiguus
nTPM: 23406.4
2071 Male, age 76, both hemispheres 27179.6
2096 Female, age 85, both hemispheres 19633.2
Nucleus cuneatus
nTPM: 27498.8
2805 Female, age 91, both hemispheres 36803.2
2380 Male, age 80, both hemispheres 29736.0
2808 Female, age 85, both hemispheres 29488.8
2100 Male, age 76, both hemispheres 25063.5
2562 Male, age 61, both hemispheres 22730.0
2564 Male, age 74, both hemispheres 21171.5
Nucleus gracilis
nTPM: 26581.0
2382 Male, age 80, both hemispheres 31563.7
2299 Female, age 85, both hemispheres 27263.6
2627 Male, age 74, both hemispheres 20915.7
Nucleus raphe magnus
nTPM: 17349.6
2328 Male, age 80, both hemispheres 21382.3
2459 Female, age 91, both hemispheres 20929.5
2051 Male, age 76, both hemispheres 19009.2
2455 Male, age 74, both hemispheres 16048.9
2172 Female, age 85, both hemispheres 13609.2
2160 Male, age 61, both hemispheres 13118.7
Nucleus raphe obscurus
nTPM: 30812.9
2845 Female, age 85, midline 31785.5
2142 Male, age 76, midline 31596.9
2800 Male, age 61, midline 29056.2
Nucleus raphe pallidus
nTPM: 24232.6
2145 Male, age 76, midline 35835.8
2183 Male, age 80, midline 20050.7
1924 Male, age 61, midline 16811.3
Nucleus tractus solitarii
nTPM: 13406.3
2191 Female, age 85, both hemispheres 14975.5
2307 Male, age 80, both hemispheres 14515.7
2656 Male, age 76, both hemispheres 13056.5
2144 Female, age 91, right hemisphere 11077.5
Parvicellular reticular nuclei
nTPM: 21989.9
2095 Male, age 76, both hemispheres 27148.5
2119 Male, age 80, both hemispheres 21553.3
2558 Male, age 74, both hemispheres 17268.0
Parvicellular reticular nuclei, medullary
nTPM: 18135.7
2189 Female, age 91, both hemispheres 19535.2
2181 Male, age 80, left hemisphere 18202.2
2091 Female, age 85, both hemispheres 16669.7
Peritrigeminal nucleus
nTPM: 20659.2
2136 Male, age 76, both hemispheres 22491.1
2179 Male, age 61, both hemispheres 19783.6
2067 Female, age 85, both hemispheres 19703.0
Prepositus hypoglossal nucleus
nTPM: 18769.3
2855 Female, age 85, right hemisphere 23992.4
2086 Male, age 80, both hemispheres 13546.2
Spinal trigeminal nucleus, caudal
nTPM: 21775.8
2308 Male, age 80, both hemispheres 26635.4
2312 Male, age 61, both hemispheres 24033.5
2447 Male, age 76, both hemispheres 20753.6
2390 Female, age 91, both hemispheres 19098.1
2642 Male, age 74, both hemispheres 18358.4
Spinal trigeminal nucleus, interpolar
nTPM: 18316.8
2033 Male, age 80, both hemispheres 20071.0
2389 Female, age 91, both hemispheres 19836.8
2625 Male, age 61, both hemispheres 18206.2
2386 Female, age 85, both hemispheres 17659.6
2066 Male, age 76, right hemisphere 15810.3
Spinal vestibular nucleus
nTPM: 22143.5
2806 Female, age 85, both hemispheres 24176.0
2796 Male, age 61, both hemispheres 23976.1
2384 Male, age 74, both hemispheres 23969.8
2748 Male, age 76, both hemispheres 21597.8
2780 Male, age 80, both hemispheres 19707.1
2186 Female, age 91, both hemispheres 19434.5
Ventral medullary reticular nucleus
nTPM: 22733.1
2372 Male, age 61, both hemispheres 24405.5
2060 Male, age 76, both hemispheres 21060.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 21495.0
2118 Male, age 80, both hemispheres 25074.0
2302 Female, age 91, both hemispheres 23646.9
2180 Male, age 61, both hemispheres 20763.2
1986 Male, age 76, both hemispheres 19832.9
2741 Female, age 85, both hemispheres 18158.0

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 21790.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 21790.9
FF:10038-101F2 18-64 years, mixed 33003.0
FF:10155-103A2 76 years, female 19026.8
FF:10174-103C3 60 years, female 13343.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 16146.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 16146.9
Samples: 4

Max nTPM: 19686.6
Min nTPM: 10849.8
Sample A Female 15319.0
Sample B Female 10849.8
Sample C Male 19686.6
Sample D Male 18732.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.6
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 22.2
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 13.0

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