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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23219.4 nTPM
HPA:23219.4 nTPM
GTEx:87141.3 nTPM
FANTOM5:29692.7 Scaled Tags Per Million
Pig:26219.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 23219.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 17731.5
2565 Male, age 75, midline 19856.1
2816 Male, age 47, midline 19281.2
2048 Male, age 55, midline 16811.7
1981 Female, age 72, midline 16506.3
2194 Female, age 79, both hemispheres 16202.1
Cervical spinal cord, dorsal horn
nTPM: 16530.1
2296 Male, age 66, both hemispheres 21875.9
2173 Female, age 72, unknown 20077.9
1877 Male, age 55, unknown 16368.6
2069 Male, age 47, both hemispheres 14834.5
2297 Male, age 75, both hemispheres 13105.6
2721 Male, age 90, both hemispheres 12918.2
Cervical spinal cord, ventral horn
nTPM: 23219.4
2480 Male, age 75, both hemispheres 31989.4
2809 Male, age 90, both hemispheres 26757.0
2295 Male, age 66, both hemispheres 21865.9
2068 Male, age 55, unknown 21129.9
2820 Female, age 79, both hemispheres 20713.9
2098 Female, age 72, unknown 16860.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87141.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 87141.3
Samples: 159

Max nTPM: 270826.1
Min nTPM: 14771.4
Std nTPM: 45219.5
Median nTPM: 77898.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 270826.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 244246.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 243832.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 203679.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 183775.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 181861.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 179704.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 172585.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 166758.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 166139.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 159058.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 155864.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 154515.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 148026.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 147262.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 143908.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 142312.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 141103.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 140032.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 139337.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137761.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 137453.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 136583.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132724.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 132528.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 132322.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 131219.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130510.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 130139.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 128032.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 125040.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 123533.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121509.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 119794.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 117454.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117176.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 116615.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 116521.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115041.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 110790.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108273.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 105119.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 104714.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 104199.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 103699.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 102500.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 102164.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 101896.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 100116.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 99564.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 99545.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 99515.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 99276.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 98787.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 98479.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 98045.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 95864.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 95325.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 92958.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 92131.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 90901.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 90543.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 90191.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 89452.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 88985.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88722.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 86714.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 85165.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 85126.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 85072.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 83422.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 82779.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 81082.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 79985.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 79686.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79276.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78848.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 78770.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 78277.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 77898.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 77149.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 76927.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 76594.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 76535.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75620.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 74017.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 72784.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 72645.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 70593.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 70208.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 69448.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 68970.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 67911.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 67055.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 65077.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 65008.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 64975.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 64098.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 63415.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 63108.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 63088.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 62951.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62208.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 61958.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 60957.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 60794.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 60373.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 59917.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59713.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 58880.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 58723.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 58036.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57794.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 56803.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 56643.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 56064.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 55894.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55466.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 54204.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 54058.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 54023.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 53838.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 53501.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 52164.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 52127.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 51868.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51457.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 50322.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 50212.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49603.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 49448.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 49067.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 48419.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48207.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 47911.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 47150.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 45073.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 45069.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 44914.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 44181.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42911.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42670.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 41337.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 41185.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 40989.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39787.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 36929.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 34594.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 34090.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32669.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 32067.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 31789.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 27136.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 26758.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26392.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 23157.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 21136.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19189.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 14771.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29692.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 29692.7
FF:10159-103A6 76 years, female 33907.1
FF:10181-103D1 60 years, female 25478.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26219.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 19813.4
Samples: 4

Max nTPM: 20793.5
Min nTPM: 17804.6
Sample A Female 17804.6
Sample B Female 20793.5
Sample C Male 20070.0
Sample D Male 20585.5
Ventral spinal cord
nTPM: 26219.5
Samples: 4

Max nTPM: 37367.6
Min nTPM: 21289.2
Sample A Female 22443.9
Sample B Female 23777.2
Sample C Male 21289.2
Sample D Male 37367.6

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