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MBP
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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:30044.2 nTPM
HPA:30044.2 nTPM
FANTOM5:51664.0 Scaled Tags Per Million
Pig:27622.2 nTPM
Mouse:21676.4 nTPM

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 30044.2
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 20462.8
1920 Male, age 76, both hemispheres 20462.8
Anterior funiculus (white matter)
nTPM: 20628.3
2734 Male, age 80, both hemispheres 25290.8
2818 Female, age 79, both hemispheres 21003.0
2819 Male, age 47, both hemispheres 18481.5
2193 Male, age 75, both hemispheres 17737.8
Area striata (white matter)
nTPM: 21365.4
2258 Female, age 91, left hemisphere 21365.4
Cerebellar white matter
nTPM: 30044.2
1837 Male, age 76, left hemisphere 48393.9
2174 Male, age 61, right hemisphere 33342.9
1864 Male, age 80, left hemisphere 26718.4
2773 Female, age 85, right hemisphere 26315.2
1931 Female, age 91, left hemisphere 24789.9
2105 Male, age 74, right hemisphere 20705.1
Corpus callosum, genu (white matter)
nTPM: 19115.9
1887 Male, age 76, left hemisphere 34679.8
1849 Female, age 91, right hemisphere 20815.3
1934 Male, age 61, right hemisphere 19140.0
1886 Female, age 67, right hemisphere 13979.9
2771 Male, age 75, left hemisphere 13114.3
1885 Female, age 94, left hemisphere 12966.4
Corpus callosum, splenium (white matter)
nTPM: 19095.5
1946 Male, age 76, left hemisphere 31818.5
2238 Female, age 94, right hemisphere 16362.4
2104 Male, age 75, left hemisphere 14950.2
2847 Female, age 67, right hemisphere 13250.9
Dorsal funiculus (white matter)
nTPM: 22650.4
2810 Male, age 90, both hemispheres 26895.7
2817 Male, age 47, both hemispheres 24546.6
2064 Female, age 79, both hemispheres 22441.7
2812 Male, age 66, both hemispheres 20024.8
2128 Male, age 75, both hemispheres 19343.1
Lateral funiculus (white matter)
nTPM: 18431.8
2094 Female, age 79, both hemispheres 22644.7
2192 Male, age 75, both hemispheres 18253.3
2099 Male, age 90, both hemispheres 17740.5
2294 Male, age 66, both hemispheres 15088.8
Occipital cortex (white matter)
nTPM: 16930.7
2259 Male, age 75, midline 18601.1
2257 Female, age 67, both hemispheres 15260.3
Parahippocampal cortex (white matter)
nTPM: 15948.7
2157 Female, age 91, both hemispheres 15948.7
Parieto-temporal junction (white matter)
nTPM: 23236.0
2121 Male, age 76, left hemisphere 38658.4
2774 Male, age 61, right hemisphere 24512.7
2770 Female, age 91, right hemisphere 23281.2
1935 Female, age 94, right hemisphere 19604.3
2469 Male, age 75, right hemisphere 18809.7
1999 Female, age 67, right hemisphere 14549.4
Somatomor cortex, precentral gyrus (white matter)
nTPM: 15854.0
2439 Male, age 75, right hemisphere 15854.0
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 15494.5
2623 Male, age 75, right hemisphere 15494.5
Temporal white matter
nTPM: 26541.5
2524 Female, age 85, left hemisphere 32690.4
2736 Female, age 91, right hemisphere 29600.7
2523 Female, age 94, left hemisphere 28031.6
1801 Male, age 76, left hemisphere 24107.8
2254 Male, age 75, right hemisphere 18276.7

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 51664.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 51664.0
FF:10042-101F6 24-68 years, mixed 51664.0

WHITE MATTER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27622.2
Pig sample Sample description nTPM
Corpus callosum
nTPM: 27622.2
Samples: 4

Max nTPM: 31137.1
Min nTPM: 24127.6
Sample A Female 24127.6
Sample B Female 28867.1
Sample C Male 31137.1
Sample D Male 26357.1

WHITE MATTER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21676.4
Mouse sample Sample description nTPM
Corpus callosum
nTPM: 21676.4
Samples: 3

Max nTPM: 22556.7
Min nTPM: 20305.4
Sample A Male 22556.7
Sample B Male 20305.4
Sample D Female 22167.2

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by the Knut & Alice Wallenberg Foundation.