MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22193.8 nTPM
HPA:22193.8 nTPM
GTEx:42438.0 nTPM
FANTOM5:32539.8 Scaled Tags Per Million
Pig:13566.4 nTPM
Mouse:5703.4 nTPM
Allen mouse:17.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22193.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18348.6
1830 Male, age 51, unknown 22202.3
1833 Male, age 53, unknown 20198.2
2666 Male, age 74, left hemisphere 19488.4
2019 Male, age 18, unknown 18831.2
1870 Female, age 42, unknown 18792.9
2411 Female, age 72, unknown 18672.4
2586 Male, age 75, left hemisphere 18509.7
2828 Female, age 72, unknown 17570.9
2219 Male, age 76, both hemispheres 14972.0
1827 Male, age 72, unknown 14248.2
Dorsal raphe nucleus
nTPM: 14784.3
2750 Male, age 76, both hemispheres 21922.2
2016 Female, age 72, unknown 14798.9
1828 Male, age 53, unknown 14162.5
2047 Male, age 72, unknown 12242.6
2298 Female, age 72, unknown 10795.2
Inferior colliculus
nTPM: 13607.1
1848 Female, age 42, unknown 14302.9
1890 Male, age 53, unknown 14275.3
2849 Male, age 72, unknown 14205.5
2097 Female, age 72, unknown 11644.6
Median raphe nucleus
nTPM: 15273.0
2220 Male, age 76, midline 15273.0
Pedunculopontine tegmental nucleus
nTPM: 17391.6
2334 Male, age 80, both hemispheres 19182.8
2338 Male, age 61, both hemispheres 18402.4
1921 Female, age 85, both hemispheres 14589.6
Periaquaductal grey, anterior
nTPM: 12546.6
2502 Female, age 75, unknown 13043.4
1947 Male, age 18, unknown 12870.4
1795 Male, age 51, unknown 11725.9
Periaquaductal grey, dorsal
nTPM: 11784.3
2464 Female, age 72, unknown 14548.4
1831 Male, age 72, unknown 12347.2
1840 Male, age 53, unknown 10215.9
2850 Male, age 76, both hemispheres 10025.7
Periaquaductal grey, lateral
nTPM: 11615.4
2053 Male, age 18, unknown 12676.5
2272 Male, age 74, both hemispheres 12053.4
2140 Male, age 76, both hemispheres 10116.4
Pretectal area
nTPM: 13009.0
1815 Male, age 53, unknown 15483.7
2316 Male, age 76, right hemisphere 15367.3
2407 Male, age 75, both hemispheres 14341.9
1817 Female, age 42, unknown 13954.0
2825 Male, age 18, unknown 13908.8
2007 Male, age 72, unknown 13840.1
2224 Female, age 72, unknown 11411.8
1944 Female, age 72, unknown 11348.5
2667 Female, age 75, unknown 11325.7
2273 Male, age 74, both hemispheres 11169.2
1816 Male, age 51, unknown 10947.5
Red nucleus
nTPM: 22193.8
1865 Male, age 51, unknown 25992.7
2503 Female, age 72, unknown 25193.2
2823 Male, age 76, right hemisphere 23991.6
2588 Male, age 74, left hemisphere 23858.0
2769 Male, age 72, unknown 23031.3
1904 Male, age 53, unknown 22946.8
2227 Male, age 72, unknown 22906.7
1821 Female, age 72, unknown 21870.1
2785 Male, age 18, unknown 20537.6
1954 Female, age 42, unknown 19463.7
2584 Male, age 75, left hemisphere 18777.1
2725 Female, age 75, unknown 17756.7
Substantia nigra
nTPM: 15181.2
2665 Male, age 74, both hemispheres 17448.1
2583 Male, age 75, right hemisphere 16895.8
2590 Female, age 75, unknown 16274.0
1851 Male, age 51, unknown 15837.6
1889 Female, age 72, unknown 15741.2
2699 Male, age 18, unknown 15381.2
2409 Female, age 72, unknown 14748.0
1941 Male, age 53, unknown 14035.9
2241 Male, age 72, unknown 12784.8
1916 Female, age 42, unknown 12665.4
Superior colliculus
nTPM: 15492.0
2668 Female, age 75, unknown 18767.4
1913 Female, age 42, unknown 18289.1
1995 Male, age 72, unknown 18086.8
2587 Male, age 74, left hemisphere 16580.7
1839 Male, age 51, unknown 16276.2
1895 Male, age 76, right hemisphere 15559.2
2664 Male, age 75, both hemispheres 14046.5
1796 Male, age 53, unknown 13464.4
2087 Female, age 72, unknown 12304.1
2261 Male, age 18, unknown 11545.9
Ventral tegmental area
nTPM: 16894.7
2223 Female, age 72, unknown 25364.5
2410 Female, age 72, unknown 16578.0
2021 Male, age 53, unknown 15557.4
2218 Male, age 76, both hemispheres 15227.2
1942 Male, age 51, unknown 15139.3
1915 Female, age 42, unknown 13501.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42438.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42438.0
Samples: 139

Max nTPM: 155244.4
Min nTPM: 6291.3
Std nTPM: 28132.6
Median nTPM: 34918.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 155244.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 129850.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123305.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122632.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 120882.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 117141.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 104928.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 104228.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 100826.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 94145.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 88137.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32539.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32539.8
FF:10158-103A5 76 years, female 32539.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 13566.4
Pig sample Sample description nTPM
Midbrain
nTPM: 13566.4
Samples: 4

Max nTPM: 35126.4
Min nTPM: 4658.6
Sample A Female 35126.4
Sample B Female 9631.5
Sample C Male 4849.0
Sample D Male 4658.6
Periaqueductal gray
nTPM: 5739.8
Samples: 3

Max nTPM: 6663.4
Min nTPM: 4150.9
Sample B Female 6663.4
Sample C Male 4150.9
Sample D Male 6405.2
Substantia nigra
nTPM: 10519.4
Samples: 4

Max nTPM: 18751.4
Min nTPM: 5149.2
Sample A Female 9980.3
Sample B Female 5149.2
Sample C Male 8196.6
Sample D Male 18751.4
Superior colliculi
nTPM: 8073.2
Samples: 4

Max nTPM: 10814.0
Min nTPM: 3892.9
Sample A Female 8420.2
Sample B Female 3892.9
Sample C Male 9165.7
Sample D Male 10814.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5703.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5703.4
Samples: 4

Max nTPM: 6444.9
Min nTPM: 4868.3
Sample A Male 6076.4
Sample B Male 4868.3
Sample C Female 5424.1
Sample D Female 6444.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.1
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 22.3
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.