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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:353.4 nTPM
HPA:353.4 nTPM
GTEx:430.9 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Pig:414.9 nTPM
Mouse:716.4 nTPM
Allen mouse:11.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000857
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 353.4
Sample id Sample description nTPM
Hippocampus
nTPM: 350.3
2529 Female, age 94, left hemisphere 357.8
2621 Female, age 67, right hemisphere 355.2
1898 Male, age 80, left hemisphere 351.4
1855 Male, age 76, left hemisphere 351.3
1911 Female, age 85, right hemisphere 344.0
2148 Female, age 91, left hemisphere 341.9
Dentate gyrus
nTPM: 352.0
2530 Female, age 94, left hemisphere 372.6
2010 Male, age 76, both hemispheres 355.2
2246 Female, age 85, both hemispheres 353.0
2531 Female, age 67, both hemispheres 350.5
2528 Male, age 74, both hemispheres 342.5
1927 Female, age 91, both hemispheres 337.9
Entorhinal gyrus
nTPM: 350.5
2686 Male, age 75, right hemisphere 361.6
1787 Male, age 76, left hemisphere 353.7
2117 Female, age 91, right hemisphere 351.0
2764 Male, age 80, right hemisphere 349.0
1938 Female, age 85, left hemisphere 348.3
2613 Female, age 94, left hemisphere 339.5
Hippocampus, CA1
nTPM: 348.4
2045 Male, age 76, both hemispheres 354.3
2527 Male, age 74, both hemispheres 349.0
2082 Female, age 91, right hemisphere 348.6
1873 Female, age 85, both hemispheres 345.7
2749 Male, age 80, left hemisphere 344.1
Hippocampus, CA2
nTPM: 350.7
2437 Female, age 94, left hemisphere 358.9
1892 Male, age 76, both hemispheres 352.6
1963 Male, age 80, left hemisphere 351.7
2113 Female, age 91, right hemisphere 348.0
1940 Female, age 85, left hemisphere 347.7
2249 Male, age 74, both hemispheres 345.6
Hippocampus, CA3
nTPM: 344.2
1867 Male, age 76, both hemispheres 354.1
1891 Female, age 85, both hemispheres 349.2
2861 Female, age 67, both hemispheres 344.6
2137 Male, age 80, left hemisphere 343.9
2436 Male, age 74, both hemispheres 341.9
2620 Female, age 94, left hemisphere 331.7
Parahippocampal cortex
nTPM: 347.9
2018 Male, age 76, both hemispheres 362.8
1850 Male, age 80, both hemispheres 356.2
2532 Female, age 72, left hemisphere 350.8
2692 Male, age 74, both hemispheres 350.3
2245 Female, age 91, both hemispheres 347.8
2250 Female, age 67, right hemisphere 346.8
1990 Female, age 91, right hemisphere 343.5
1933 Female, age 85, both hemispheres 341.9
2622 Female, age 67, right hemisphere 339.4
2693 Female, age 94, both hemispheres 339.3
Perirhinal gyrus
nTPM: 351.2
2848 Male, age 76, right hemisphere 355.3
1841 Female, age 85, right hemisphere 352.1
1794 Male, age 80, right hemisphere 351.3
1847 Female, age 91, left hemisphere 350.9
2521 Female, age 94, right hemisphere 346.5
Subiculum
nTPM: 353.4
2438 Female, age 94, left hemisphere 380.9
1977 Female, age 85, both hemispheres 352.8
2042 Male, age 76, both hemispheres 348.7
2619 Male, age 74, both hemispheres 348.5
1901 Male, age 80, both hemispheres 346.8
2729 Female, age 91, right hemisphere 343.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 430.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 430.9
Samples: 197

Max nTPM: 1115.1
Min nTPM: 217.6
Std nTPM: 150.8
Median nTPM: 399.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1115.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 989.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 928.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 902.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 898.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 873.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 848.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 788.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 769.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 747.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 716.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 689.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 686.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 659.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 643.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 625.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 621.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 619.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 608.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 608.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 600.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 597.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 590.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 590.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 588.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 584.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 573.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 572.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 570.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 561.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 561.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 557.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 549.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 537.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 534.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 529.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 525.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 523.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 522.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 522.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 519.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 518.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 518.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 517.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 515.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 515.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 506.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 505.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 500.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 498.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 496.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 491.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 491.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 490.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 489.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 488.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 487.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 480.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 478.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 477.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 477.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 474.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 472.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 470.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 467.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 465.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 465.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 463.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 451.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 451.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 446.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 441.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 438.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 437.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 434.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 432.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 431.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 431.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 430.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 429.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 428.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 428.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 426.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 423.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 416.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 414.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 414.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 412.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 412.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 409.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 409.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 407.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 407.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 403.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 402.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 400.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 400.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 399.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 399.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 398.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 395.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 395.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 393.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 391.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 391.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 390.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 390.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 389.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 387.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 385.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 385.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 380.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 372.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 371.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 369.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 368.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 364.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 363.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 359.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 359.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 358.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 358.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 357.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 355.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 353.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 352.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 351.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 350.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 348.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 347.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 346.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 340.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 339.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 338.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 337.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 337.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 337.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 335.6
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 330.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 329.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 328.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 327.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 325.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 324.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 323.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 323.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 323.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 322.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 321.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 320.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 320.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 319.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 318.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 317.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 316.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 315.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 313.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 312.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 310.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 310.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 308.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 307.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 307.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 306.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 306.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 304.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 300.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 298.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 298.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 298.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 297.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 292.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 291.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 290.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 290.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 289.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 288.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 280.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 280.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 278.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 278.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 276.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 272.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 272.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 270.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 269.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 269.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 263.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 262.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 257.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 257.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 252.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 233.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 230.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 224.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 220.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 217.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 46.8
FF:10169-103B7 60 years, female 59.6
FF:10153-102I9 76 years, female 34.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 414.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 414.9
Samples: 4

Max nTPM: 539.8
Min nTPM: 306.6
Sample A Female 539.8
Sample B Female 362.7
Sample C Male 450.6
Sample D Male 306.6
Entorhinal cortex
nTPM: 312.2
Samples: 4

Max nTPM: 342.1
Min nTPM: 263.0
Sample A Female 310.8
Sample B Female 342.1
Sample C Male 333.0
Sample D Male 263.0
Subiculum
nTPM: 355.3
Samples: 4

Max nTPM: 453.8
Min nTPM: 309.9
Sample A Female 453.8
Sample B Female 335.0
Sample C Male 322.5
Sample D Male 309.9
Ventral hippocampus
nTPM: 359.6
Samples: 4

Max nTPM: 414.1
Min nTPM: 298.1
Sample A Female 373.6
Sample B Female 298.1
Sample C Male 414.1
Sample D Male 352.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 716.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 681.4
Samples: 4

Max nTPM: 744.1
Min nTPM: 636.8
Sample A Male 694.5
Sample B Male 636.8
Sample C Female 744.1
Sample D Female 650.3
Hippocampal formation
nTPM: 716.4
Samples: 4

Max nTPM: 803.4
Min nTPM: 669.5
Sample A Male 803.4
Sample B Male 680.6
Sample C Female 669.5
Sample D Female 711.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.0
69873295 Antisense, RP_050510_04_H12, Mouse strain C57BL/6J (56 days, male) 11.0

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