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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:385.5 nTPM
HPA:385.5 nTPM
GTEx:580.6 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:635.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 385.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 361.1
1981 Female, age 72, midline 383.2
2565 Male, age 75, midline 364.7
2048 Male, age 55, midline 356.7
2194 Female, age 79, both hemispheres 354.4
2816 Male, age 47, midline 346.7
Cervical spinal cord, dorsal horn
nTPM: 368.0
2173 Female, age 72, unknown 392.3
2069 Male, age 47, both hemispheres 386.6
2296 Male, age 66, both hemispheres 379.3
1877 Male, age 55, unknown 360.3
2721 Male, age 90, both hemispheres 347.4
2297 Male, age 75, both hemispheres 342.0
Cervical spinal cord, ventral horn
nTPM: 385.5
2480 Male, age 75, both hemispheres 416.3
2098 Female, age 72, unknown 406.4
2809 Male, age 90, both hemispheres 397.6
2295 Male, age 66, both hemispheres 389.1
2068 Male, age 55, unknown 361.9
2820 Female, age 79, both hemispheres 341.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 580.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 580.6
Samples: 159

Max nTPM: 1242.8
Min nTPM: 238.3
Std nTPM: 208.5
Median nTPM: 544.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1242.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1135.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1073.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1066.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1048.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1010.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 998.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 995.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 984.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 979.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 971.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 944.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 940.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 928.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 894.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 888.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 870.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 864.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 859.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 857.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 845.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 837.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 834.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 833.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 784.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 775.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 773.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 772.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 772.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 771.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 769.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 769.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 768.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 755.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 751.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 741.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 727.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 716.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 710.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 704.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 693.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 692.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 690.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 681.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 680.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 673.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 668.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 664.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 662.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 656.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 650.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 650.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 647.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 641.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 638.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 636.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 635.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 624.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 620.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 612.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 611.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 609.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 604.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 601.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 597.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 593.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 583.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 579.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 575.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 575.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 575.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 569.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 561.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 554.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 553.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 548.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 547.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 546.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 545.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 544.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 540.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 533.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 531.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 525.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 525.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 520.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 520.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 519.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 514.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 509.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 507.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 507.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 500.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 499.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 498.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 497.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 494.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 489.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 485.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 479.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 476.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 473.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 471.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 464.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 462.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 458.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 455.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 453.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 449.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 448.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 448.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 447.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 443.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 442.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 440.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 438.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 436.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 435.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 435.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 431.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 423.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 421.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 420.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 420.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 411.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 405.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 398.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 393.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 387.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 386.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 383.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 380.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 380.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 371.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 368.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 360.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 358.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 358.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 353.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 352.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 351.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 351.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 347.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 345.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 340.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 339.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 329.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 325.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 316.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 315.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 296.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 291.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 291.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 283.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 278.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 272.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 244.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 241.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 238.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 39.6
FF:10181-103D1 60 years, female 41.3
FF:10159-103A6 76 years, female 38.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 635.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 635.8
Samples: 4

Max nTPM: 857.0
Min nTPM: 415.3
Sample A Female 415.3
Sample B Female 752.2
Sample C Male 857.0
Sample D Male 518.7
Ventral spinal cord
nTPM: 598.9
Samples: 4

Max nTPM: 673.7
Min nTPM: 492.0
Sample A Female 492.0
Sample B Female 673.3
Sample C Male 673.7
Sample D Male 556.4

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The Human Protein Atlas project is funded
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