MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:367.7 nTPM
HPA:367.7 nTPM
GTEx:517.6 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:500.9 nTPM
Mouse:728.6 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 367.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 354.4
1870 Female, age 42, unknown 368.9
2666 Male, age 74, left hemisphere 365.7
2411 Female, age 72, unknown 361.2
1833 Male, age 53, unknown 354.7
2219 Male, age 76, both hemispheres 354.3
1827 Male, age 72, unknown 352.0
1830 Male, age 51, unknown 351.6
2828 Female, age 72, unknown 349.2
2019 Male, age 18, unknown 345.3
2586 Male, age 75, left hemisphere 341.7
Dorsal raphe nucleus
nTPM: 354.3
2298 Female, age 72, unknown 359.4
2750 Male, age 76, both hemispheres 359.1
2016 Female, age 72, unknown 358.7
1828 Male, age 53, unknown 348.2
2047 Male, age 72, unknown 346.3
Inferior colliculus
nTPM: 358.5
2849 Male, age 72, unknown 361.8
1848 Female, age 42, unknown 359.7
1890 Male, age 53, unknown 358.2
2097 Female, age 72, unknown 354.4
Median raphe nucleus
nTPM: 358.8
2220 Male, age 76, midline 358.8
Pedunculopontine tegmental nucleus
nTPM: 367.7
2338 Male, age 61, both hemispheres 386.4
2334 Male, age 80, both hemispheres 370.9
1921 Female, age 85, both hemispheres 345.8
Periaquaductal grey, anterior
nTPM: 354.1
2502 Female, age 75, unknown 362.5
1947 Male, age 18, unknown 350.8
1795 Male, age 51, unknown 348.9
Periaquaductal grey, dorsal
nTPM: 357.4
1840 Male, age 53, unknown 368.3
2850 Male, age 76, both hemispheres 357.2
2464 Female, age 72, unknown 352.7
1831 Male, age 72, unknown 351.2
Periaquaductal grey, lateral
nTPM: 354.4
2140 Male, age 76, both hemispheres 357.7
2053 Male, age 18, unknown 356.8
2272 Male, age 74, both hemispheres 348.7
Pretectal area
nTPM: 349.8
2316 Male, age 76, right hemisphere 360.8
2224 Female, age 72, unknown 360.0
2825 Male, age 18, unknown 358.6
1815 Male, age 53, unknown 351.3
1817 Female, age 42, unknown 351.3
2007 Male, age 72, unknown 346.2
2667 Female, age 75, unknown 346.1
1816 Male, age 51, unknown 345.2
1944 Female, age 72, unknown 343.5
2273 Male, age 74, both hemispheres 342.5
2407 Male, age 75, both hemispheres 342.1
Red nucleus
nTPM: 358.4
2503 Female, age 72, unknown 379.8
1821 Female, age 72, unknown 364.7
1865 Male, age 51, unknown 362.9
2227 Male, age 72, unknown 360.3
2725 Female, age 75, unknown 358.4
2769 Male, age 72, unknown 357.4
1904 Male, age 53, unknown 356.7
1954 Female, age 42, unknown 355.6
2588 Male, age 74, left hemisphere 354.8
2823 Male, age 76, right hemisphere 351.3
2785 Male, age 18, unknown 349.9
2584 Male, age 75, left hemisphere 349.6
Substantia nigra
nTPM: 356.8
2699 Male, age 18, unknown 370.2
2241 Male, age 72, unknown 368.7
1851 Male, age 51, unknown 367.1
2665 Male, age 74, both hemispheres 364.7
2409 Female, age 72, unknown 360.3
2590 Female, age 75, unknown 355.5
1916 Female, age 42, unknown 350.0
1889 Female, age 72, unknown 347.7
1941 Male, age 53, unknown 347.2
2583 Male, age 75, right hemisphere 336.7
Superior colliculus
nTPM: 354.9
2587 Male, age 74, left hemisphere 368.7
1913 Female, age 42, unknown 364.8
1839 Male, age 51, unknown 358.5
1995 Male, age 72, unknown 358.3
1796 Male, age 53, unknown 354.0
1895 Male, age 76, right hemisphere 351.3
2261 Male, age 18, unknown 351.0
2668 Female, age 75, unknown 350.0
2664 Male, age 75, both hemispheres 347.6
2087 Female, age 72, unknown 345.0
Ventral tegmental area
nTPM: 362.5
2223 Female, age 72, unknown 370.7
2021 Male, age 53, unknown 367.5
1915 Female, age 42, unknown 362.6
2410 Female, age 72, unknown 361.7
2218 Male, age 76, both hemispheres 356.6
1942 Male, age 51, unknown 355.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 517.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 517.6
Samples: 139

Max nTPM: 1758.3
Min nTPM: 218.8
Std nTPM: 202.3
Median nTPM: 486.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1758.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1025.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1024.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 975.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 956.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 945.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 841.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 838.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 804.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 798.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 791.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 500.9
Pig sample Sample description nTPM
Midbrain
nTPM: 484.8
Samples: 4

Max nTPM: 691.8
Min nTPM: 354.9
Sample A Female 691.8
Sample B Female 525.3
Sample C Male 354.9
Sample D Male 367.1
Periaqueductal gray
nTPM: 409.0
Samples: 3

Max nTPM: 428.0
Min nTPM: 387.8
Sample B Female 411.3
Sample C Male 428.0
Sample D Male 387.8
Substantia nigra
nTPM: 500.9
Samples: 4

Max nTPM: 577.7
Min nTPM: 467.0
Sample A Female 577.7
Sample B Female 484.7
Sample C Male 467.0
Sample D Male 474.3
Superior colliculi
nTPM: 485.8
Samples: 4

Max nTPM: 549.3
Min nTPM: 425.9
Sample A Female 549.3
Sample B Female 510.4
Sample C Male 425.9
Sample D Male 457.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 728.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 728.6
Samples: 4

Max nTPM: 751.4
Min nTPM: 694.2
Sample A Male 751.4
Sample B Male 741.6
Sample C Female 727.1
Sample D Female 694.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
69873295 Antisense, RP_050510_04_H12, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.