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RPS4X
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  • RPS4X
PATHOLOGY OVARIAN CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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VALIDATION
Dictionary
Ovarian cancer
Human pathology
Ovarian cancer
OVARIAN CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPS4X is not prognostic in ovarian cancer


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 752.22
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 785.7
Number of samples 373
Samples
Sample Description FPKM
TCGA-25-2393-01A 81 years, female, white, dead, 1157 days 3292.9
TCGA-09-1669-01A 54 years, female, white, alive, 928 days 2438.4
TCGA-25-1316-01A 55 years, female, white, dead, 1279 days 2431.9
TCGA-04-1519-01A 48 years, female, alive, 24 days 2431.7
TCGA-25-1632-01A 68 years, female, white, dead, 1799 days 2307.6
TCGA-24-1846-01A 45 years, female, alive, 133 days 2161.7
TCGA-61-2110-01A 56 years, female, white, dead, 1354 days 2114.4
TCGA-13-0885-01A 70 years, female, white, alive, 3388 days 2033.8
TCGA-23-1113-01A 48 years, female, white, dead, 949 days 1950.1
TCGA-24-2038-01A 68 years, female, white, dead, 1354 days 1932.8
TCGA-09-2056-01B 62 years, female, white, alive, 379 days 1924.5
TCGA-10-0928-01A 71 years, female, white, dead, 563 days 1923.9
TCGA-23-1024-01A 52 years, female, white, alive, 468 days 1923.7
TCGA-24-0966-01A 78 years, female, black or african american, alive, 232 days 1923.3
TCGA-30-1891-01A 61 years, female, white, dead, 914 days 1829.7
TCGA-13-0901-01B 42 years, female, asian, alive, 589 days 1783.0
TCGA-61-1725-01A 40 years, female, white, alive, 956 days 1748.3
TCGA-13-1477-01A 49 years, female, white, dead, 1662 days 1732.2
TCGA-29-1768-01A 50 years, female, white, dead, 952 days 1643.6
TCGA-13-0727-01A 71 years, female, white, dead, 462 days 1631.3
TCGA-10-0927-01A 65 years, female, dead, 2490 days 1595.3
TCGA-24-1565-01A 74 years, female, white, dead, 312 days 1547.1
TCGA-30-1714-01A 68 years, female, white, dead, 1158 days 1536.3
TCGA-13-0804-01A 74 years, female, white, dead, 1073 days 1509.8
TCGA-13-1501-01A 50 years, female, white, dead, 1314 days 1491.4
TCGA-13-1409-01A 73 years, female, white, dead, 1742 days 1450.8
TCGA-13-0884-01B 39 years, female, white, dead, 3260 days 1445.7
TCGA-25-2396-01A 71 years, female, white, dead, 92 days 1438.8
TCGA-61-1721-01A 38 years, female, white, alive, 338 days 1431.4
TCGA-09-1666-01A 57 years, female, white, alive, 1752 days 1419.1
TCGA-10-0931-01A 44 years, female, white, dead, 1000 days 1412.1
TCGA-25-1630-01A 73 years, female, white, dead, 1162 days 1404.3
TCGA-13-0762-01A 65 years, female, white, alive, 3400 days 1389.7
TCGA-25-1631-01A 73 years, female, white, dead, 9 days 1375.3
TCGA-23-1022-01A 67 years, female, white, dead, 1511 days 1374.5
TCGA-24-2267-01A 58 years, female, white, dead, 1446 days 1373.3
TCGA-29-1784-01A 55 years, female, white, alive, 163 days 1364.8
TCGA-23-1021-01B 45 years, female, white, dead, 1446 days 1361.7
TCGA-23-1028-01A 43 years, female, white, alive, 1503 days 1360.8
TCGA-29-1761-01A 80 years, female, asian, dead, 528 days 1346.4
TCGA-29-1777-01A 47 years, female, white, alive, 374 days 1341.6
TCGA-61-2109-01A 40 years, female, white, dead, 629 days 1333.7
TCGA-13-0725-01A 44 years, female, white, dead, 377 days 1331.9
TCGA-36-1577-01A 43 years, female, asian, alive, 783 days 1303.4
TCGA-13-1404-01A 48 years, female, white, alive, 2469 days 1294.8
TCGA-09-2048-01A 63 years, female, white, dead, 138 days 1281.2
TCGA-30-1853-01A 58 years, female, white, dead, 1103 days 1279.1
TCGA-30-1861-01A 74 years, female, white, dead, 1058 days 1275.2
TCGA-29-1690-01A 66 years, female, white, dead, 1448 days 1263.1
TCGA-57-1583-01A 57 years, female, black or african american, dead, 346 days 1255.0
TCGA-29-1696-01A 43 years, female, white, dead, 1032 days 1249.2
TCGA-13-1483-01A 61 years, female, white, dead, 895 days 1226.8
TCGA-25-1328-01A 38 years, female, white, dead, 2009 days 1209.3
TCGA-13-0883-01A 61 years, female, white, dead, 2097 days 1208.8
TCGA-09-1673-01A 50 years, female, white, alive, 92 days 1198.6
TCGA-29-1703-01A 56 years, female, black or african american, dead, 1815 days 1196.3
TCGA-09-2054-01A 58 years, female, black or african american, dead, 637 days 1190.8
TCGA-13-1408-01A 59 years, female, white, dead, 1680 days 1185.2
TCGA-23-1027-01A 48 years, female, white, dead, 976 days 1182.3
TCGA-61-1918-01A 45 years, female, white, dead, 479 days 1178.4
TCGA-25-1319-01A 73 years, female, white, dead, 1977 days 1177.1
TCGA-24-1616-01A 56 years, female, white, dead, 1163 days 1176.4
TCGA-24-1551-01A 53 years, female, white, dead, 1579 days 1165.3
TCGA-61-2008-01A 40 years, female, asian, alive, 932 days 1161.9
TCGA-36-1568-01A 52 years, female, alive, 875 days 1159.5
TCGA-61-1728-01A 59 years, female, white, alive, 848 days 1147.4
TCGA-61-2000-01A 67 years, female, white, alive, 441 days 1140.3
TCGA-57-1584-01A 47 years, female, white, alive, 643 days 1109.2
TCGA-04-1651-01A 53 years, female, white, dead, 1102 days 1107.9
TCGA-23-1030-01A 64 years, female, white, alive, 886 days 1095.3
TCGA-25-2400-01A 76 years, female, white, dead, 1278 days 1092.9
TCGA-24-2033-01A 87 years, female, white, dead, 562 days 1091.1
TCGA-29-1776-01A 63 years, female, black or african american, alive, 360 days 1086.4
TCGA-61-2092-01A 57 years, female, white, alive, 1573 days 1083.2
TCGA-09-1665-01B 74 years, female, white, dead, 1266 days 1076.7
TCGA-13-A5FT-01A 67 years, female, black or african american, alive, 2143 days 1072.5
TCGA-23-1026-01B 45 years, female, white, alive, 816 days 1064.4
TCGA-30-1892-01A 52 years, female, white, dead, 1484 days 1053.7
TCGA-30-1718-01A 44 years, female, white, dead, 1579 days 1035.2
TCGA-23-1119-01A 64 years, female, white, alive, 3953 days 1033.5
TCGA-36-1569-01A 52 years, female, white, alive, 885 days 1031.3
TCGA-24-1924-01A 65 years, female, white, dead, 919 days 1020.2
TCGA-13-1489-01A 70 years, female, white, dead, 2553 days 1012.7
TCGA-24-1567-01A 54 years, female, white, dead, 524 days 1011.5
TCGA-09-2053-01C 72 years, female, white, alive, 1209 days 1004.4
TCGA-24-1553-01A 53 years, female, white, dead, 1767 days 1001.9
TCGA-09-1670-01A 57 years, female, white, alive, 547 days 1001.7
TCGA-59-2355-01A female, white, dead, 65 days 994.9
TCGA-04-1536-01A 60 years, female, black or african american, dead, 885 days 992.5
TCGA-24-1467-01A 51 years, female, white, dead, 3224 days 991.1
TCGA-VG-A8LO-01A 55 years, female, black or african american, dead, 24 days 989.9
TCGA-24-1923-01A 51 years, female, white, dead, 690 days 987.3
TCGA-04-1655-01A 49 years, female, white, dead, 1380 days 975.2
TCGA-24-1416-01A 34 years, female, white, alive, 194 days 972.8
TCGA-29-1783-01A 58 years, female, white, alive, 220 days 967.2
TCGA-24-2024-01A 72 years, female, black or african american, dead, 1769 days 966.7
TCGA-25-2409-01A 71 years, female, white, dead, 821 days 966.5
TCGA-04-1362-01A 59 years, female, white, dead, 1348 days 946.8
TCGA-13-0724-01A 72 years, female, white, dead, 83 days 938.2
TCGA-24-1546-01A 46 years, female, white, dead, 1955 days 934.4
TCGA-24-1413-01A 51 years, female, white, alive, 192 days 934.4
TCGA-WR-A838-01A 72 years, female, black or african american, dead, 304 days 931.7
TCGA-04-1350-01A 46 years, female, white, dead, 1946 days 918.1
TCGA-25-1870-01A 59 years, female, white, dead, 455 days 914.4
TCGA-13-0886-01A 67 years, female, white, alive, 4665 days 908.0
TCGA-61-1907-01A 63 years, female, white, alive, 952 days 904.9
TCGA-13-1509-01A 64 years, female, white, alive, 2438 days 893.0
TCGA-24-1428-01A 50 years, female, white, alive, 529 days 888.1
TCGA-04-1347-01A 81 years, female, white, alive, 1919 days 887.9
TCGA-13-0765-01A 50 years, female, white, dead, 1389 days 885.7
TCGA-36-1570-01A 49 years, female, white, alive, 655 days 880.4
TCGA-25-1877-01A 81 years, female, white, dead, 730 days 880.3
TCGA-10-0936-01A 69 years, female, black or african american, dead, 1123 days 879.3
TCGA-04-1514-01A 45 years, female, white, dead, 1720 days 874.3
TCGA-24-1426-01A 43 years, female, white, alive, 163 days 874.1
TCGA-13-0766-01A 42 years, female, white, dead, 1725 days 872.0
TCGA-09-1659-01B 51 years, female, white, dead, 304 days 868.4
TCGA-24-1471-01A 60 years, female, white, alive, 36 days 868.4
TCGA-24-1930-01A 53 years, female, white, dead, 2467 days 865.9
TCGA-57-1582-01A female, white, dead, 731 days 858.7
TCGA-31-1944-01A 47 years, female, white, alive, 1386 days 858.6
TCGA-13-1510-01A 62 years, female, white, dead, 1359 days 854.2
TCGA-29-1691-01A 51 years, female, white, dead, 1470 days 851.4
TCGA-13-0795-01A 66 years, female, white, dead, 619 days 850.8
TCGA-29-1762-01A 59 years, female, white, dead, 2634 days 848.3
TCGA-04-1343-01A 72 years, female, white, dead, 361 days 847.8
TCGA-61-2097-01A 71 years, female, white, alive, 1844 days 843.1
TCGA-30-1866-01A 61 years, female, white, dead, 1114 days 836.5
TCGA-23-1118-01A 45 years, female, white, alive, 2616 days 836.0
TCGA-13-1496-01A 65 years, female, white, dead, 129 days 835.4
TCGA-61-1919-01A 58 years, female, white, dead, 1161 days 834.9
TCGA-24-1562-01A 67 years, female, white, dead, 1384 days 832.6
TCGA-59-2363-01A female, asian, alive, 165 days 829.0
TCGA-29-1701-01A 56 years, female, white, dead, 515 days 828.8
TCGA-23-1111-01A 63 years, female, white, alive, 98 days 827.3
TCGA-13-0714-01A 55 years, female, white, dead, 189 days 825.9
TCGA-20-1682-01A 56 years, female, white, alive, 837 days 825.5
TCGA-24-1419-01A 62 years, female, white, alive, 239 days 820.1
TCGA-24-1845-01A 42 years, female, white, alive, 116 days 817.7
TCGA-61-1914-01A 65 years, female, alive, 1722 days 817.0
TCGA-57-1586-01A 66 years, female, white, alive, 679 days 814.7
TCGA-61-1900-01A 51 years, female, black or african american, alive, 176 days 813.7
TCGA-23-1107-01A 59 years, female, white, dead, 9 days 805.2
TCGA-10-0937-01A 44 years, female, white, dead, 608 days 796.7
TCGA-61-1724-01A 47 years, female, white, dead, 637 days 789.9
TCGA-10-0938-01A 80 years, female, white, dead, 636 days 783.0
TCGA-61-2002-01A 46 years, female, white, alive, 547 days 779.9
TCGA-24-1544-01A 71 years, female, black or african american, dead, 820 days 768.6
TCGA-24-0968-01A 59 years, female, white, dead, 598 days 768.0
TCGA-29-1769-01A 40 years, female, white, alive, 699 days 759.0
TCGA-24-1431-01A 67 years, female, white, dead, 567 days 758.5
TCGA-09-1667-01C 61 years, female, white, alive, 1882 days 745.9
TCGA-29-1770-01A 54 years, female, white, alive, 741 days 745.7
TCGA-23-1110-01A 42 years, female, white, alive, 1658 days 745.7
TCGA-24-2023-01A 54 years, female, white, dead, 1364 days 744.8
TCGA-13-1407-01A 51 years, female, white, alive, 2534 days 744.2
TCGA-04-1356-01A 62 years, female, white, dead, 1499 days 739.7
TCGA-29-2427-01A 60 years, female, white, alive, 1900 days 739.3
TCGA-13-1495-01A 60 years, female, white, dead, 2749 days 739.0
TCGA-24-1550-01A 49 years, female, white, dead, 1249 days 735.7
TCGA-13-0730-01A 71 years, female, white, dead, 542 days 731.8
TCGA-24-1464-01A 70 years, female, white, dead, 379 days 728.0
TCGA-13-1506-01A 45 years, female, white, dead, 1039 days 723.2
TCGA-13-1485-01A 48 years, female, white, dead, 629 days 721.6
TCGA-29-2425-01A 60 years, female, white, alive, 1977 days 721.0
TCGA-09-1662-01A 58 years, female, white, dead, 2717 days 720.9
TCGA-24-1844-01A 64 years, female, white, alive, 113 days 719.3
TCGA-24-2261-01A 76 years, female, white, dead, 24 days 718.5
TCGA-24-2281-01A 68 years, female, white, alive, 1357 days 716.1
TCGA-13-1487-01A 74 years, female, white, dead, 681 days 714.1
TCGA-13-0720-01A 48 years, female, white, dead, 1355 days 713.3
TCGA-09-0367-01A 67 years, female, native hawaiian or other pacific islander, dead, 547 days 712.0
TCGA-04-1341-01A 85 years, female, white, alive, 33 days 711.6
TCGA-24-2293-01A 47 years, female, white, dead, 506 days 711.1
TCGA-04-1361-01A 57 years, female, white, alive, 989 days 709.6
TCGA-24-1103-01A 50 years, female, black or african american, dead, 1646 days 706.7
TCGA-13-0887-01A 42 years, female, white, dead, 2028 days 706.6
TCGA-59-2351-01A female, white, alive, 3532 days 704.5
TCGA-25-1329-01A 76 years, female, white, dead, 457 days 703.4
TCGA-04-1365-01A 87 years, female, white, alive, 2329 days 703.1
TCGA-13-2060-01A 51 years, female, white, alive, 2369 days 698.4
TCGA-29-2414-01A 75 years, female, white, dead, 2621 days 697.5
TCGA-29-1688-01A 39 years, female, white, dead, 2400 days 697.1
TCGA-36-1574-01A 48 years, female, asian, alive, 686 days 693.9
TCGA-30-1860-01A 58 years, female, white, dead, 1366 days 681.8
TCGA-13-1403-01A 48 years, female, white, dead, 2345 days 679.7
TCGA-24-1604-01A 67 years, female, white, dead, 2688 days 679.7
TCGA-29-1781-01A 69 years, female, white, alive, 255 days 677.9
TCGA-29-1693-01A 72 years, female, white, alive, 3096 days 675.8
TCGA-24-1104-01A 56 years, female, white, dead, 1933 days 674.1
TCGA-04-1542-01A 52 years, female, white, dead, 2561 days 673.2
TCGA-25-1323-01A 72 years, female, white, dead, 395 days 672.9
TCGA-31-1956-01A 60 years, female, white, alive, 1342 days 662.5
TCGA-23-1114-01B 55 years, female, white, dead, 2089 days 658.8
TCGA-13-0905-01B 51 years, female, white, alive, 3746 days 657.6
TCGA-61-1998-01A 48 years, female, white, alive, 168 days 656.4
TCGA-20-1687-01A 46 years, female, white, alive, 81 days 651.7
TCGA-25-1634-01A 76 years, female, white, dead, 1091 days 644.9
TCGA-59-A5PD-01A 55 years, female, black or african american, dead, 624 days 644.0
TCGA-13-1505-01A 63 years, female, white, alive, 1998 days 641.8
TCGA-13-1498-01A 73 years, female, white, dead, 2012 days 640.3
TCGA-20-0991-01A 78 years, female, white, alive, 797 days 639.1
TCGA-24-2254-01A 66 years, female, white, dead, 1736 days 636.8
TCGA-59-2350-01A female, dead, 679 days 630.3
TCGA-20-0987-01A 61 years, female, white, dead, 701 days 629.4
TCGA-29-1778-01A 77 years, female, white, alive, 454 days 629.3
TCGA-25-1322-01A 62 years, female, white, dead, 91 days 625.7
TCGA-31-1959-01A 49 years, female, white, alive, 67 days 622.6
TCGA-61-1910-01A 56 years, female, white, alive, 1127 days 619.9
TCGA-23-2084-01A 45 years, female, white, dead, 1516 days 615.0
TCGA-24-0970-01B 63 years, female, white, dead, 354 days 611.3
TCGA-29-1785-01A 55 years, female, white, dead, 1104 days 609.1
TCGA-04-1364-01A 61 years, female, white, dead, 1024 days 608.5
TCGA-24-1843-01A 67 years, female, white, alive, 106 days 598.5
TCGA-24-0979-01A 53 years, female, white, dead, 1264 days 598.3
TCGA-24-2020-01A 67 years, female, white, dead, 4624 days 597.8
TCGA-23-1122-01A 53 years, female, white, dead, 1189 days 595.2
TCGA-09-2044-01B 77 years, female, asian, alive, 186 days 593.6
TCGA-23-1109-01A 63 years, female, white, dead, 1562 days 587.3
TCGA-13-0924-01A 45 years, female, white, alive, 2614 days 584.8
TCGA-59-2354-01A female, white, dead, 1046 days 582.6
TCGA-29-2428-01A 58 years, female, white, alive, 1372 days 582.5
TCGA-36-1576-01A 76 years, female, alive, 915 days 581.7
TCGA-24-2035-01A 65 years, female, white, dead, 857 days 576.7
TCGA-24-0982-01A 77 years, female, white, dead, 679 days 573.8
TCGA-24-1424-01A 67 years, female, white, alive, 183 days 570.1
TCGA-20-1686-01A 75 years, female, white, alive, 89 days 569.3
TCGA-04-1331-01A 79 years, female, white, dead, 1336 days 565.1
TCGA-23-1123-01A 59 years, female, white, dead, 1018 days 563.8
TCGA-30-1857-01A 64 years, female, white, dead, 8 days 563.1
TCGA-24-1435-01A 57 years, female, white, dead, 1324 days 562.0
TCGA-61-1736-01B 45 years, female, white, dead, 1484 days 560.3
TCGA-25-1635-01A 71 years, female, white, dead, 1583 days 558.1
TCGA-29-1774-01A 82 years, female, white, alive, 527 days 557.3
TCGA-24-2290-01A 56 years, female, white, dead, 1102 days 554.7
TCGA-24-2280-01A 74 years, female, white, alive, 2143 days 548.3
TCGA-25-1321-01A 65 years, female, white, dead, 1033 days 547.4
TCGA-24-2271-01A 55 years, female, asian, dead, 962 days 545.7
TCGA-61-2009-01A 65 years, female, white, alive, 1212 days 544.5
TCGA-24-1563-01A 66 years, female, black or african american, dead, 1451 days 543.9
TCGA-61-1738-01A 60 years, female, black or african american, dead, 1089 days 543.7
TCGA-29-1705-01A 48 years, female, white, dead, 555 days 542.4
TCGA-13-0920-01A 65 years, female, white, dead, 1484 days 541.8
TCGA-24-1430-01A 68 years, female, white, dead, 863 days 541.7
TCGA-25-2404-01A 38 years, female, american indian or alaska native, dead, 883 days 539.3
TCGA-13-0800-01A 52 years, female, white, alive, 2661 days 537.8
TCGA-24-1417-01A 54 years, female, white, alive, 238 days 537.0
TCGA-61-1737-01A 42 years, female, white, alive, 1364 days 534.5
TCGA-31-1946-01A 30 years, female, alive, 918 days 532.5
TCGA-61-2101-01A 55 years, female, white, dead, 1688 days 532.1
TCGA-36-1580-01A 82 years, female, dead, 737 days 531.0
TCGA-24-2036-01A 50 years, female, white, dead, 1947 days 530.6
TCGA-23-2078-01A 66 years, female, white, alive, 2661 days 530.4
TCGA-25-1317-01A 66 years, female, white, dead, 61 days 529.1
TCGA-25-2401-01A 64 years, female, white, dead, 90 days 525.9
TCGA-29-1694-01A 45 years, female, white, dead, 1187 days 523.4
TCGA-13-1507-01A 77 years, female, white, dead, 1993 days 523.3
TCGA-25-1326-01A 61 years, female, white, dead, 1249 days 520.1
TCGA-09-1661-01B 75 years, female, white, dead, 1169 days 519.4
TCGA-30-1862-01A 65 years, female, white, dead, 186 days 519.1
TCGA-13-0916-01A 49 years, female, white, alive, 1785 days 514.7
TCGA-61-2012-01A 81 years, female, white, alive, 932 days 512.7
TCGA-23-1116-01A 83 years, female, white, dead, 592 days 512.0
TCGA-25-1315-01A 50 years, female, white, dead, 1583 days 508.1
TCGA-23-1023-01A 65 years, female, white, alive, 1233 days 504.6
TCGA-13-1405-01A 49 years, female, white, dead, 868 days 499.8
TCGA-24-1603-01A 53 years, female, white, dead, 2742 days 499.4
TCGA-29-1766-01A 74 years, female, white, dead, 1199 days 499.2
TCGA-25-2398-01A 71 years, female, white, dead, 1369 days 495.3
TCGA-61-2111-01A 61 years, female, white, alive, 3825 days 493.1
TCGA-13-1410-01A 57 years, female, white, alive, 2464 days 492.1
TCGA-31-1950-01A 76 years, female, white, alive, 571 days 488.1
TCGA-25-2391-01A 57 years, female, white, dead, 1492 days 487.6
TCGA-09-0364-01A 80 years, female, white, dead, 887 days 487.2
TCGA-13-0893-01B 48 years, female, black or african american, dead, 1319 days 483.2
TCGA-04-1530-01A 68 years, female, white, dead, 3622 days 479.0
TCGA-09-0366-01A 56 years, female, white, dead, 1757 days 476.7
TCGA-13-0911-01A 55 years, female, white, dead, 1355 days 476.5
TCGA-31-1951-01A 58 years, female, white, alive, 684 days 476.3
TCGA-61-1911-01A 55 years, female, white, alive, 1293 days 475.7
TCGA-23-1029-01B 46 years, female, white, alive, 268 days 475.2
TCGA-24-1928-01A 77 years, female, white, dead, 336 days 474.9
TCGA-04-1648-01A 57 years, female, white, dead, 871 days 474.5
TCGA-29-1697-01A 62 years, female, white, dead, 949 days 473.2
TCGA-13-0923-01A 74 years, female, white, alive, 2547 days 472.4
TCGA-24-1427-01A 58 years, female, alive, 147 days 472.0
TCGA-13-1499-01A 56 years, female, white, alive, 3500 days 470.8
TCGA-24-1474-01A 57 years, female, black or african american, dead, 676 days 470.3
TCGA-57-1585-01A 57 years, female, white, dead, 53 days 469.2
TCGA-13-0906-01A 50 years, female, white, alive, 3619 days 466.6
TCGA-13-0897-01A 54 years, female, white, dead, 2182 days 466.2
TCGA-24-1105-01A 36 years, female, white, dead, 1442 days 464.0
TCGA-24-1557-01A 49 years, female, white, dead, 1213 days 463.8
TCGA-61-1741-01A 76 years, female, white, dead, 1024 days 463.4
TCGA-25-2392-01A 75 years, female, white, dead, 31 days 461.7
TCGA-09-2045-01A 50 years, female, asian, dead, 1069 days 461.1
TCGA-61-2098-01A 62 years, female, white, alive, 1993 days 459.4
TCGA-25-1320-01A 65 years, female, white, dead, 1155 days 459.2
TCGA-23-2077-01A 45 years, female, white, alive, 3525 days 459.1
TCGA-04-1332-01A 70 years, female, white, dead, 1247 days 456.9
TCGA-61-2003-01A 53 years, female, white, alive, 122 days 453.9
TCGA-24-1560-01A 51 years, female, white, dead, 1341 days 447.2
TCGA-24-1558-01A 73 years, female, white, dead, 594 days 446.3
TCGA-25-1313-01A 62 years, female, white, dead, 820 days 445.1
TCGA-04-1338-01A 78 years, female, white, alive, 1418 days 443.8
TCGA-13-0891-01A 73 years, female, white, dead, 3128 days 442.4
TCGA-29-1710-01A 54 years, female, white, dead, 951 days 442.2
TCGA-59-2352-01A female, white, dead, 286 days 441.8
TCGA-09-1668-01B 57 years, female, white, alive, 1684 days 439.7
TCGA-24-1847-01A 45 years, female, white, alive, 343 days 430.2
TCGA-25-2399-01A 80 years, female, white, dead, 608 days 422.3
TCGA-13-0900-01B 59 years, female, white, alive, 4077 days 420.8
TCGA-24-1434-01A 59 years, female, white, dead, 568 days 420.2
TCGA-29-1763-01A 43 years, female, black or african american, alive, 2032 days 412.8
TCGA-24-1470-01A 54 years, female, white, alive, 105 days 412.1
TCGA-24-1842-01A 49 years, female, white, alive, 253 days 405.8
TCGA-24-2027-01A 51 years, female, white, dead, 3337 days 405.4
TCGA-57-1993-01A 56 years, female, white, alive, 763 days 404.9
TCGA-59-2348-01A female, white, alive, 5481 days 401.2
TCGA-24-1423-01A 61 years, female, white, alive, 190 days 401.1
TCGA-25-1627-01A 73 years, female, white, dead, 394 days 399.7
TCGA-13-0768-01A 73 years, female, white, dead, 1784 days 395.4
TCGA-5X-AA5U-01A 61 years, female, black or african american, alive, 361 days 395.3
TCGA-13-0888-01A 78 years, female, white, dead, 2811 days 395.0
TCGA-13-0726-01A 55 years, female, white, dead, 949 days 387.4
TCGA-25-1312-01A 69 years, female, white, dead, 31 days 383.8
TCGA-24-2289-01A 69 years, female, white, dead, 2049 days 383.5
TCGA-36-1571-01A 53 years, female, white, dead, 695 days 381.5
TCGA-13-1512-01A 49 years, female, white, alive, 442 days 375.7
TCGA-25-1633-01A 64 years, female, white, dead, 1891 days 373.0
TCGA-09-2051-01A 42 years, female, white, alive, 1919 days 372.7
TCGA-24-2288-01A 70 years, female, white, dead, 25 days 372.2
TCGA-10-0933-01A 77 years, female, white, dead, 446 days 371.7
TCGA-31-1953-01A 52 years, female, asian, alive, 204 days 369.7
TCGA-24-1850-01A 72 years, female, white, alive, 168 days 366.3
TCGA-29-1711-01A 45 years, female, black or african american, alive, 1053 days 362.0
TCGA-61-1995-01A 43 years, female, white, alive, 61 days 349.4
TCGA-24-1422-01A 82 years, female, black or african american, dead, 23 days 340.0
TCGA-24-1469-01A 71 years, female, white, alive, 277 days 339.5
TCGA-13-0908-01B 58 years, female, white, dead, 1843 days 339.0
TCGA-13-1497-01A 48 years, female, white, alive, 3871 days 337.3
TCGA-25-1623-01A 71 years, female, white, dead, 565 days 336.4
TCGA-24-1418-01A 68 years, female, white, alive, 243 days 333.9
TCGA-25-2042-01A 60 years, female, american indian or alaska native, dead, 396 days 331.8
TCGA-29-A5NZ-01A 66 years, female, black or african american, dead, 1088 days 331.0
TCGA-OY-A56Q-01A 78 years, female, black or african american, alive, 576 days 330.2
TCGA-13-1488-01A 59 years, female, white, dead, 2154 days 330.0
TCGA-24-1425-01A 45 years, female, white, alive, 181 days 326.9
TCGA-24-1552-01A 77 years, female, white, dead, 1259 days 326.8
TCGA-24-1549-01A 58 years, female, white, dead, 1721 days 322.3
TCGA-13-1411-01A 81 years, female, white, dead, 531 days 321.5
TCGA-13-0797-01A 49 years, female, white, alive, 2121 days 320.7
TCGA-24-2262-01A 57 years, female, white, dead, 11 days 319.3
TCGA-20-1683-01A 65 years, female, white, alive, 772 days 319.2
TCGA-57-1994-01A 63 years, female, white, alive, 761 days 319.0
TCGA-13-1492-01A 66 years, female, white, dead, 3819 days 317.1
TCGA-61-1733-01A 71 years, female, white, alive, 967 days 314.6
TCGA-24-2026-01A 79 years, female, white, dead, 1059 days 311.5
TCGA-25-1626-01A 65 years, female, white, dead, 518 days 311.3
TCGA-23-1120-01A 60 years, female, white, alive, 130 days 299.8
TCGA-09-0369-01A 56 years, female, white, dead, 1082 days 290.7
TCGA-24-2298-01A 56 years, female, white, dead, 1620 days 281.9
TCGA-24-2297-01A 56 years, female, white, dead, 1699 days 274.1
TCGA-25-1318-01A 54 years, female, white, dead, 1064 days 267.4
TCGA-61-2088-01A 51 years, female, white, alive, 145 days 267.2
TCGA-23-1809-01A 63 years, female, white, alive, 16 days 256.6
TCGA-61-2104-01A 53 years, female, white, alive, 2338 days 255.2
TCGA-29-1695-01A 62 years, female, white, dead, 1229 days 245.6
TCGA-25-1628-01A 67 years, female, white, dead, 627 days 242.4
TCGA-36-1581-01A 63 years, female, white, alive, 751 days 235.7
TCGA-13-1511-01A 52 years, female, asian, dead, 1650 days 215.2
TCGA-61-2102-01A 74 years, female, white, dead, 197 days 153.3
TCGA-61-2113-01A 54 years, female, white, dead, 676 days 143.9
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OVARIAN CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA000857
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

Contact

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.