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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:375.3 nTPM
HPA:375.3 nTPM
GTEx:86.0 nTPM
FANTOM5:73.8 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 375.3
Sample id Sample description nTPM
Amygdala
nTPM: 375.3
2695 Female, age 67, right hemisphere 399.2
2814 Male, age 76, right hemisphere 393.8
2514 Male, age 75, right hemisphere 368.0
1987 Female, age 91, left hemisphere 361.7
2517 Female, age 94, left hemisphere 354.1
Basal amygdala
nTPM: 353.9
2609 Male, age 75, right hemisphere 379.1
1955 Male, age 76, both hemispheres 357.9
2110 Male, age 80, left hemisphere 352.4
2243 Female, age 91, right hemisphere 350.0
2685 Female, age 94, left hemisphere 346.5
2827 Female, age 67, right hemisphere 337.5
Central amygdala
nTPM: 353.4
1905 Male, age 76, both hemispheres 367.3
2515 Male, age 75, right hemisphere 360.9
2701 Female, age 91, right hemisphere 351.8
2826 Female, age 94, left hemisphere 345.5
2239 Male, age 80, left hemisphere 341.4
Corticomedial amygdala
nTPM: 350.4
2428 Male, age 75, right hemisphere 366.1
2829 Male, age 80, left hemisphere 360.1
2240 Male, age 76, both hemispheres 352.8
2429 Female, age 94, left hemisphere 346.5
2242 Female, age 91, right hemisphere 340.2
2535 Female, age 67, right hemisphere 336.5
Lateral amygdala
nTPM: 346.8
1883 Male, age 76, both hemispheres 367.2
2516 Male, age 75, right hemisphere 359.6
2255 Female, age 91, right hemisphere 343.9
2256 Male, age 80, left hemisphere 339.2
2830 Female, age 67, right hemisphere 337.5
2534 Female, age 94, left hemisphere 333.6
Stria terminalis, bed nucleus
nTPM: 341.2
2486 Female, age 94, both hemispheres 342.6
2201 Male, age 74, unknown 342.5
1974 Female, age 91, both hemispheres 338.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 86.0
Samples: 152

Max nTPM: 341.9
Min nTPM: 7.4
Std nTPM: 58.5
Median nTPM: 71.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 328.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 295.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 270.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 255.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 249.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 223.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 213.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 206.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 189.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 186.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 168.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 168.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 167.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 165.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 162.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 161.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 154.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 140.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 139.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 135.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 126.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 110.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 109.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 106.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 102.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 101.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 101.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 101.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 101.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 100.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 95.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 91.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 87.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 87.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 86.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 84.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 84.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 83.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 82.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 81.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 80.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 79.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 77.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 76.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 76.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 75.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 74.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 73.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 71.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 71.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 70.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 69.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 69.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 65.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 65.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 61.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 61.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 59.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 58.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 57.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 57.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 57.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 56.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 56.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 55.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 54.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 54.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 53.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 53.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 53.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 53.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 52.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 51.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 50.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 50.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 49.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 47.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 45.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 45.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 42.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 39.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 39.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 39.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 39.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 37.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 37.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 36.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 36.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 35.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 34.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 34.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 33.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 33.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 33.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 32.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 32.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 31.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 30.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 29.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 25.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 23.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 23.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 17.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 7.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 73.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 73.8
FF:10151-102I7 76 years, female 73.8

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