MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:407.6 nTPM
HPA:407.6 nTPM
GTEx:181.8 nTPM
FANTOM5:138.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 407.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 365.8
2828 Female, age 72, unknown 391.0
2586 Male, age 75, left hemisphere 389.8
1827 Male, age 72, unknown 379.2
1833 Male, age 53, unknown 368.1
1870 Female, age 42, unknown 366.0
1830 Male, age 51, unknown 359.1
2019 Male, age 18, unknown 353.4
2666 Male, age 74, left hemisphere 352.6
2411 Female, age 72, unknown 352.5
2219 Male, age 76, both hemispheres 346.7
Dorsal raphe nucleus
nTPM: 384.3
1828 Male, age 53, unknown 422.5
2016 Female, age 72, unknown 416.9
2047 Male, age 72, unknown 371.9
2298 Female, age 72, unknown 364.4
2750 Male, age 76, both hemispheres 346.0
Inferior colliculus
nTPM: 384.6
1848 Female, age 42, unknown 392.4
2097 Female, age 72, unknown 386.8
2849 Male, age 72, unknown 380.7
1890 Male, age 53, unknown 378.4
Median raphe nucleus
nTPM: 357.3
2220 Male, age 76, midline 357.3
Pedunculopontine tegmental nucleus
nTPM: 354.6
1921 Female, age 85, both hemispheres 360.0
2338 Male, age 61, both hemispheres 352.2
2334 Male, age 80, both hemispheres 351.7
Periaquaductal grey, anterior
nTPM: 378.0
1795 Male, age 51, unknown 393.4
2502 Female, age 75, unknown 382.9
1947 Male, age 18, unknown 357.6
Periaquaductal grey, dorsal
nTPM: 397.2
2850 Male, age 76, both hemispheres 421.7
1840 Male, age 53, unknown 408.1
1831 Male, age 72, unknown 384.1
2464 Female, age 72, unknown 374.8
Periaquaductal grey, lateral
nTPM: 407.6
2140 Male, age 76, both hemispheres 416.3
2053 Male, age 18, unknown 405.4
2272 Male, age 74, both hemispheres 401.0
Pretectal area
nTPM: 385.0
2273 Male, age 74, both hemispheres 444.1
2667 Female, age 75, unknown 403.2
1944 Female, age 72, unknown 395.4
2825 Male, age 18, unknown 387.7
1816 Male, age 51, unknown 387.6
2316 Male, age 76, right hemisphere 386.3
2224 Female, age 72, unknown 383.7
1817 Female, age 42, unknown 366.7
2407 Male, age 75, both hemispheres 364.7
1815 Male, age 53, unknown 360.0
2007 Male, age 72, unknown 355.0
Red nucleus
nTPM: 371.5
2503 Female, age 72, unknown 390.1
1821 Female, age 72, unknown 383.6
2769 Male, age 72, unknown 378.5
2823 Male, age 76, right hemisphere 378.4
2725 Female, age 75, unknown 376.3
2227 Male, age 72, unknown 375.2
1954 Female, age 42, unknown 374.6
2588 Male, age 74, left hemisphere 363.8
2584 Male, age 75, left hemisphere 362.8
2785 Male, age 18, unknown 359.8
1904 Male, age 53, unknown 358.8
1865 Male, age 51, unknown 356.2
Substantia nigra
nTPM: 390.6
2699 Male, age 18, unknown 454.8
2409 Female, age 72, unknown 406.4
1851 Male, age 51, unknown 402.1
1916 Female, age 42, unknown 391.8
2241 Male, age 72, unknown 391.2
1889 Female, age 72, unknown 384.9
2590 Female, age 75, unknown 378.4
2665 Male, age 74, both hemispheres 374.4
2583 Male, age 75, right hemisphere 365.0
1941 Male, age 53, unknown 356.7
Superior colliculus
nTPM: 385.1
1995 Male, age 72, unknown 402.9
2587 Male, age 74, left hemisphere 399.7
2664 Male, age 75, both hemispheres 397.3
2261 Male, age 18, unknown 389.5
1839 Male, age 51, unknown 388.6
1796 Male, age 53, unknown 387.5
1913 Female, age 42, unknown 380.9
2087 Female, age 72, unknown 377.1
1895 Male, age 76, right hemisphere 365.4
2668 Female, age 75, unknown 362.5
Ventral tegmental area
nTPM: 382.2
2021 Male, age 53, unknown 414.3
1915 Female, age 42, unknown 389.3
2410 Female, age 72, unknown 387.6
2218 Male, age 76, both hemispheres 374.8
1942 Male, age 51, unknown 367.8
2223 Female, age 72, unknown 359.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 181.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 181.8
Samples: 139

Max nTPM: 872.4
Min nTPM: 23.4
Std nTPM: 136.8
Median nTPM: 149.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 872.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 817.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 817.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 532.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 448.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 435.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 413.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 371.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 365.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 365.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 336.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.8
FF:10158-103A5 76 years, female 138.8

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The Human Protein Atlas

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