BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:32.7 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:15.7 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA060452Antibody HPA062492
Glial cells LowNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.2
1781 Male, age 74, unknown 32.3
2481 Female, age 94, left hemisphere 30.1
2846 Female, age 79, unknown 30.0
2288 Male, age 75, left hemisphere 29.8
1854 Male, age 80, left hemisphere 28.7
2289 Male, age 61, right hemisphere 28.2
1857 Female, age 85, left hemisphere 27.4
2290 Female, age 72, unknown 27.4
Claustrum
nTPM: 36.1
2292 Female, age 85, both hemispheres 38.1
2568 Male, age 61, both hemispheres 37.4
2198 Male, age 80, both hemispheres 36.6
2491 Male, age 75, both hemispheres 36.2
1956 Male, age 74, unknown 35.8
2645 Female, age 72, unknown 35.4
2196 Female, age 79, unknown 35.3
2392 Female, age 94, both hemispheres 35.1
2284 Female, age 91, both hemispheres 34.9
Globus pallidus, externus
nTPM: 40.1
2567 Female, age 72, unknown 44.8
2646 Male, age 61, right hemisphere 43.7
1996 Male, age 80, right hemisphere 37.9
2772 Female, age 79, unknown 37.7
2395 Male, age 75, both hemispheres 36.7
Globus pallidus, internus
nTPM: 38.8
2483 Female, age 94, right hemisphere 44.5
2566 Female, age 72, unknown 42.7
2778 Female, age 91, both hemispheres 38.4
2287 Male, age 75, right hemisphere 38.1
2037 Male, age 80, right hemisphere 36.4
2111 Female, age 85, right hemisphere 35.9
1818 Male, age 74, unknown 35.6
Nucleus accumbens
nTPM: 29.8
2732 Male, age 80, right hemisphere 32.4
2698 Female, age 72, unknown 32.1
2391 Female, age 94, left hemisphere 31.7
2286 Male, age 75, left hemisphere 29.6
1806 Female, age 85, left hemisphere 28.6
1783 Male, age 74, unknown 28.2
2824 Male, age 61, right hemisphere 28.2
1856 Female, age 91, right hemisphere 27.2
Nucleus basalis of Meynert
nTPM: 35.2
2569 Male, age 61, both hemispheres 45.2
2821 Male, age 75, both hemispheres 33.1
2484 Female, age 94, left hemisphere 32.4
2393 Male, age 80, right hemisphere 30.3
Nucleus of the diagonal band
nTPM: 32.6
1812 Female, age 91, both hemispheres 33.7
2029 Male, age 61, right hemisphere 33.2
2775 Male, age 80, right hemisphere 32.8
2195 Female, age 85, both hemispheres 32.0
1979 Male, age 74, unknown 31.2
Olfactory tubercle
nTPM: 31.5
1846 Male, age 80, right hemisphere 32.3
1998 Female, age 91, both hemispheres 31.6
2856 Male, age 75, right hemisphere 31.5
2487 Female, age 94, left hemisphere 30.5
Putamen
nTPM: 30.2
2647 Male, age 75, left hemisphere 35.2
2489 Female, age 72, unknown 31.8
2482 Female, age 94, left hemisphere 31.0
1829 Male, age 74, unknown 29.8
1937 Female, age 91, right hemisphere 29.1
2466 Female, age 79, unknown 28.2
1838 Male, age 80, right hemisphere 26.1
Septal nuclei
nTPM: 32.4
2394 Male, age 61, left hemisphere 33.4
2199 Male, age 80, right hemisphere 33.0
1960 Male, age 74, unknown 32.6
2031 Female, age 72, unknown 32.1
2059 Female, age 85, both hemispheres 32.1
2629 Female, age 94, right hemisphere 31.8
2009 Female, age 91, both hemispheres 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 76.4
Min nTPM: 8.9
Std nTPM: 9.7
Median nTPM: 21.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 76.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 64.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 60.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 51.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 51.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 48.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 46.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 46.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 45.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 44.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 64.9
Min nTPM: 7.9
Std nTPM: 10.6
Median nTPM: 17.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 64.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 59.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 57.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 54.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 54.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 54.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 53.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 52.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 49.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 48.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 32.7
Samples: 205

Max nTPM: 98.2
Min nTPM: 11.0
Std nTPM: 15.2
Median nTPM: 28.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 98.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 92.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 84.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 78.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 73.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 70.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 70.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 68.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 62.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 62.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 61.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.5
FF:10164-103B2 76 years, female 32.5
Globus pallidus
Scaled Tags Per Million: 49.6
FF:10161-103A8 76 years, female 59.8
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 37.0
FF:10037-101F1 23-56 years, mixed 37.0
Putamen
Scaled Tags Per Million: 26.7
FF:10176-103C5 60 years, female 26.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 18.1
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 16.9
Sample C Male 18.1
Sample D Male 13.7
Putamen
nTPM: 14.8
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.7
Sample A Female 13.8
Sample B Female 11.7
Sample C Male 17.9
Sample D Male 15.9
Septum
nTPM: 19.4
Samples: 4

Max nTPM: 27.8
Min nTPM: 14.8
Sample A Female 17.1
Sample B Female 17.8
Sample C Male 27.8
Sample D Male 14.8
Ventral pallidum
nTPM: 18.6
Samples: 4

Max nTPM: 25.2
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 19.7
Sample C Male 25.2
Sample D Male 15.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.1
Sample A Male 14.0
Sample B Male 13.2
Sample C Female 17.3
Sample D Female 12.1
Septum
nTPM: 13.8
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.5
Sample A Male 16.0
Sample B Male 15.2
Sample C Female 12.4
Sample D Female 11.5
Ventral forebrain
nTPM: 15.7
Samples: 4

Max nTPM: 18.7
Min nTPM: 13.1
Sample A Male 18.7
Sample B Male 15.7
Sample C Female 13.1
Sample D Female 15.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
75828199 Antisense, RP_060601_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
75828199 Antisense, RP_060601_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.