MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:51.4 nTPM
FANTOM5:55.2 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:15.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.2
2666 Male, age 74, left hemisphere 42.8
2586 Male, age 75, left hemisphere 39.7
2828 Female, age 72, unknown 38.2
1870 Female, age 42, unknown 37.1
2019 Male, age 18, unknown 37.0
1827 Male, age 72, unknown 36.9
1833 Male, age 53, unknown 36.4
1830 Male, age 51, unknown 36.3
2411 Female, age 72, unknown 36.2
2219 Male, age 76, both hemispheres 31.7
Dorsal raphe nucleus
nTPM: 34.3
1828 Male, age 53, unknown 35.3
2750 Male, age 76, both hemispheres 35.0
2016 Female, age 72, unknown 34.6
2047 Male, age 72, unknown 34.5
2298 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 34.5
2849 Male, age 72, unknown 35.8
1890 Male, age 53, unknown 35.3
1848 Female, age 42, unknown 34.2
2097 Female, age 72, unknown 32.5
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Pedunculopontine tegmental nucleus
nTPM: 34.8
2334 Male, age 80, both hemispheres 36.2
2338 Male, age 61, both hemispheres 34.8
1921 Female, age 85, both hemispheres 33.5
Periaquaductal grey, anterior
nTPM: 37.3
1947 Male, age 18, unknown 38.4
2502 Female, age 75, unknown 36.8
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 36.1
2850 Male, age 76, both hemispheres 39.1
1831 Male, age 72, unknown 37.2
2464 Female, age 72, unknown 34.6
1840 Male, age 53, unknown 33.3
Periaquaductal grey, lateral
nTPM: 35.4
2140 Male, age 76, both hemispheres 38.2
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 36.0
1816 Male, age 51, unknown 38.4
2007 Male, age 72, unknown 37.9
1815 Male, age 53, unknown 37.8
1817 Female, age 42, unknown 37.5
2407 Male, age 75, both hemispheres 37.4
1944 Female, age 72, unknown 36.4
2825 Male, age 18, unknown 36.3
2316 Male, age 76, right hemisphere 35.7
2224 Female, age 72, unknown 33.3
2667 Female, age 75, unknown 32.7
2273 Male, age 74, both hemispheres 32.5
Red nucleus
nTPM: 39.6
2588 Male, age 74, left hemisphere 47.3
2725 Female, age 75, unknown 42.7
2503 Female, age 72, unknown 42.4
1865 Male, age 51, unknown 40.6
1904 Male, age 53, unknown 39.8
1821 Female, age 72, unknown 38.5
1954 Female, age 42, unknown 38.3
2769 Male, age 72, unknown 37.7
2823 Male, age 76, right hemisphere 37.5
2785 Male, age 18, unknown 37.0
2227 Male, age 72, unknown 36.9
2584 Male, age 75, left hemisphere 36.8
Substantia nigra
nTPM: 37.1
2665 Male, age 74, both hemispheres 40.2
2590 Female, age 75, unknown 38.1
2699 Male, age 18, unknown 37.9
1851 Male, age 51, unknown 37.4
2583 Male, age 75, right hemisphere 37.4
1916 Female, age 42, unknown 36.7
1941 Male, age 53, unknown 36.6
1889 Female, age 72, unknown 36.1
2409 Female, age 72, unknown 35.2
2241 Male, age 72, unknown 34.9
Superior colliculus
nTPM: 36.4
2587 Male, age 74, left hemisphere 39.1
2664 Male, age 75, both hemispheres 37.6
1995 Male, age 72, unknown 37.5
2668 Female, age 75, unknown 36.7
1913 Female, age 42, unknown 36.5
2261 Male, age 18, unknown 35.7
1796 Male, age 53, unknown 35.6
1839 Male, age 51, unknown 35.6
2087 Female, age 72, unknown 35.4
1895 Male, age 76, right hemisphere 34.5
Ventral tegmental area
nTPM: 36.0
2410 Female, age 72, unknown 37.2
2021 Male, age 53, unknown 36.3
2218 Male, age 76, both hemispheres 36.3
1915 Female, age 42, unknown 35.8
2223 Female, age 72, unknown 35.7
1942 Male, age 51, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.4
Samples: 139

Max nTPM: 109.7
Min nTPM: 25.9
Std nTPM: 19.5
Median nTPM: 46.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 109.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 106.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 106.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 98.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 98.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 91.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 89.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 87.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.2
FF:10158-103A5 76 years, female 55.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 16.7
Sample A Female 17.1
Sample B Female 18.3
Sample C Male 18.8
Sample D Male 16.7
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 21.6
Min nTPM: 16.5
Sample B Female 16.5
Sample C Male 21.6
Sample D Male 18.2
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 10.8
Sample A Female 26.6
Sample B Female 14.1
Sample C Male 24.6
Sample D Male 10.8
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.1
Sample A Female 19.1
Sample B Female 15.1
Sample C Male 16.8
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.7
Sample A Male 16.3
Sample B Male 14.6
Sample C Female 13.7
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75828199 Antisense, RP_060601_01_G11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.