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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:455.8 nTPM
GTEx:552.4 nTPM
FANTOM5:3517.3 Scaled Tags Per Million
Pig:1047.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 455.8
Sample id Sample description nTPM
Putamen
nTPM: 455.8
1838 Male, age 80, right hemisphere 582.9
1937 Female, age 91, right hemisphere 576.2
1829 Male, age 74, unknown 530.5
2466 Female, age 79, unknown 477.2
2482 Female, age 94, left hemisphere 396.7
2647 Male, age 75, left hemisphere 358.3
2489 Female, age 72, unknown 268.6

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 552.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 552.4
Samples: 205

Max nTPM: 1171.3
Min nTPM: 253.9
Std nTPM: 192.4
Median nTPM: 512.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 1171.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1126.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 989.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 983.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 981.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 963.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 922.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 918.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 915.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 910.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 901.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 883.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 877.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 872.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 849.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 845.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 842.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 836.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 836.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 834.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 832.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 829.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 827.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 823.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 821.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 808.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 804.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 796.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 787.0
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 785.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 778.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 772.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 771.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 770.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 766.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 765.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 761.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 747.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 744.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 743.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 737.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 730.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 727.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 721.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 717.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 715.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 713.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 709.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 708.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 701.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 695.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 676.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 674.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 667.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 667.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 659.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 657.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 656.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 655.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 647.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 646.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 642.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 642.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 637.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 634.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 634.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 631.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 630.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 624.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 624.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 623.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 613.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 611.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 608.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 607.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 604.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 604.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 600.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 597.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 579.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 579.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 576.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 576.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 574.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 572.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 564.7
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 561.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 557.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 546.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 546.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 542.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 540.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 536.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 532.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 532.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 530.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 528.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 526.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 524.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 523.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 516.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 514.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 512.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 511.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 509.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 509.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 508.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 506.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 505.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 503.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 496.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 495.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 494.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 492.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 491.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 490.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 490.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 489.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 483.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 477.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 475.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 472.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 472.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 471.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 467.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 466.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 465.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 464.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 459.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 458.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 458.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 454.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 449.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 449.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 445.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 439.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 435.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 430.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 419.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 411.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 411.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 411.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 409.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 409.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 406.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 401.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 401.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 400.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 398.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 398.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 397.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 397.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 397.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 395.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 395.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 392.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 391.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 389.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 382.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 382.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 381.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 380.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 378.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 378.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 375.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 374.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 372.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 370.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 370.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 367.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 363.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 362.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 362.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 361.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 358.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 358.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 356.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 343.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 342.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 334.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 333.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 332.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 332.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 331.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 326.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 325.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 324.5
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 321.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 320.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 317.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 310.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 305.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 301.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 295.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 291.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 283.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 282.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 281.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 279.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 279.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 278.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 269.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 264.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 260.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 253.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3517.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 3517.3
FF:10176-103C5 60 years, female 3517.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1047.0
Pig sample Sample description nTPM
Putamen
nTPM: 1047.0
Samples: 4

Max nTPM: 1582.7
Min nTPM: 561.7
Sample A Female 561.7
Sample B Female 1074.4
Sample C Male 1582.7
Sample D Male 969.2

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.