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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Cells in glomeruli: Low
Cells in tubules: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:326.3 nTPM
HPA:326.3 nTPM
GTEx:152.7 nTPM
FANTOM5:661.5 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044999Antibody CAB018558
Cells in glomeruli LowMedium
Cells in tubules LowMedium





KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 326.3
overview
Female, age 58
Kidney sample 55
nTPM: 289.9
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 250.6
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 160.8
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 255.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 373.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 370.1
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 529.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 349.4
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 357.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.7
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 152.7
Samples: 85

Max nTPM: 454.9
Min nTPM: 56.1
Std nTPM: 68.8
Median nTPM: 135.3
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 454.9
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 376.9
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 354.0
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 319.4
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 265.2
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 264.3
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 251.8
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 244.2
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 231.3
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 230.1
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 228.1
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 219.5
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 219.5
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 209.0
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 207.2
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 198.2
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 193.2
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 186.4
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 184.0
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 179.6
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 176.0
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 172.1
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 171.4
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 168.0
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 167.5
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 166.0
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 164.0
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 163.3
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 162.1
GTEX-O5YV-1226-SM-EV795 60-69 years, female 161.2
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 156.8
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 154.6
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 154.3
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 150.5
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 150.1
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 144.1
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 143.8
GTEX-14C39-2126-SM-664OH 40-49 years, male 140.8
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 139.9
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 139.8
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 138.8
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 137.4
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 135.3
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 134.5
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 127.1
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 125.5
GTEX-12696-0926-SM-5FQTV 60-69 years, male 125.0
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 124.9
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 124.9
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 120.5
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 119.3
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 119.0
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 118.7
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 116.7
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 115.8
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 114.5
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 114.3
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 113.7
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 112.7
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 111.1
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 109.0
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 107.8
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 107.5
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 106.3
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 106.0
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 105.2
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 104.3
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 101.5
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 101.4
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 100.6
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 99.3
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 99.3
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 99.2
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 98.8
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 98.6
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 97.7
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 94.1
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 89.0
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 87.1
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 85.5
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 84.4
GTEX-13112-2126-SM-5GCO4 50-59 years, male 81.7
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 75.6
GTEX-RN64-1626-SM-48FD7 50-59 years, male 73.2
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 56.1
Show allShow less
Kidney - Medulla
Average nTPM: 112.4
Samples: 4

Max nTPM: 161.1
Min nTPM: 76.5
Std nTPM: 34.5
Median nTPM: 106.0
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 161.1
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 128.6
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 83.3
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 76.5

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 661.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 661.5
FF:10017-101C8 60,62,63 years, female 661.5

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