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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:279.2 nTPM
HPA:279.2 nTPM
GTEx:213.4 nTPM
FANTOM5:1440.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044999Antibody CAB018558
Glandular cells HighHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 279.2
overview
Male, age 65
Small intestine sample 232
nTPM: 308.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 267.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 295.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 244.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 213.4
Samples: 187

Max nTPM: 493.3
Min nTPM: 62.8
Std nTPM: 104.2
Median nTPM: 190.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 493.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 491.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 457.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 454.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 453.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 449.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 426.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 423.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 416.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 415.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 413.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 409.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 409.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 396.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 394.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 384.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 376.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 373.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 368.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 365.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 361.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 361.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 360.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 354.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 354.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 351.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 348.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 346.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 346.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 344.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 337.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 328.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 328.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 327.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 325.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 323.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 323.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 319.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 318.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 316.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 315.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 299.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 296.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 293.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 286.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 282.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 282.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 279.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 275.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 271.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 271.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 270.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 269.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 263.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 260.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 258.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 257.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 256.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 255.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 251.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 246.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 245.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 245.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 243.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 241.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 235.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 235.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 234.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 234.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 230.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 228.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 227.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 226.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 225.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 224.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 215.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 210.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 207.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 206.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 205.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 202.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 201.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 200.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 199.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 198.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 198.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 196.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 196.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 195.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 195.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 192.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 191.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 191.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 181.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 176.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 175.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 174.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 173.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 172.8
GTEX-1192X-2526-SM-59868 50-59 years, male 171.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 171.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 171.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 170.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 168.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 166.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 165.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 164.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 162.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 158.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 158.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 158.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 156.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 155.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 152.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 151.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 149.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 148.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 148.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 147.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 147.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 143.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 142.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 140.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 140.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 140.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 139.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 139.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 139.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 138.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 138.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 137.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 136.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 136.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 135.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 133.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 132.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 131.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 130.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 128.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 127.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 126.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 125.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 125.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 125.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 124.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 122.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 122.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 121.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 120.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 116.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 116.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 115.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 115.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 115.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 114.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 114.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 113.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 112.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 112.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 111.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 110.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 109.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 108.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 108.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 106.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 106.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 106.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 102.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 102.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 101.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 100.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 96.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 95.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 94.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 93.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 93.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 89.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 89.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 88.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 87.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 84.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 80.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 76.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 69.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 64.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 62.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1440.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1440.5
FF:10024-101D6 15,40,85 years, mixed 1440.5

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