MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11029.3 nTPM
HPA:11029.3 nTPM
GTEx:15126.6 nTPM
Pig:4706.9 nTPM
Mouse:100.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11029.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4108.5
2219 Male, age 76, both hemispheres 15965.2
2666 Male, age 74, left hemisphere 5312.6
2828 Female, age 72, unknown 5158.2
1830 Male, age 51, unknown 4623.1
1833 Male, age 53, unknown 4573.1
2586 Male, age 75, left hemisphere 4122.9
1870 Female, age 42, unknown 709.1
1827 Male, age 72, unknown 620.6
2019 Male, age 18, unknown 0.0
2411 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 476.4
1828 Male, age 53, unknown 2382.1
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 2976.3
2849 Male, age 72, unknown 11905.2
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 11029.3
2220 Male, age 76, midline 11029.3
Pedunculopontine tegmental nucleus
nTPM: 3877.3
2334 Male, age 80, both hemispheres 6060.8
2338 Male, age 61, both hemispheres 5571.2
1921 Female, age 85, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 425.7
2502 Female, age 75, unknown 1277.3
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 3356.6
2850 Male, age 76, both hemispheres 11894.0
1831 Male, age 72, unknown 1061.2
2464 Female, age 72, unknown 471.4
1840 Male, age 53, unknown 0.0
Periaquaductal grey, lateral
nTPM: 185.6
2140 Male, age 76, both hemispheres 556.8
2053 Male, age 18, unknown 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 2501.3
1816 Male, age 51, unknown 6230.9
1815 Male, age 53, unknown 5671.0
2667 Female, age 75, unknown 4740.2
1817 Female, age 42, unknown 4413.0
1944 Female, age 72, unknown 4200.6
2825 Male, age 18, unknown 2258.6
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 1883.4
2503 Female, age 72, unknown 4955.8
2584 Male, age 75, left hemisphere 4021.6
2823 Male, age 76, right hemisphere 3339.3
2588 Male, age 74, left hemisphere 3331.4
1954 Female, age 42, unknown 3271.5
2227 Male, age 72, unknown 1560.1
2785 Male, age 18, unknown 1302.9
1904 Male, age 53, unknown 531.4
2769 Male, age 72, unknown 286.8
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
2725 Female, age 75, unknown 0.0
Substantia nigra
nTPM: 3964.5
2665 Male, age 74, both hemispheres 17740.9
2699 Male, age 18, unknown 13118.4
1916 Female, age 42, unknown 3840.8
1941 Male, age 53, unknown 3434.0
2583 Male, age 75, right hemisphere 836.7
2409 Female, age 72, unknown 674.8
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
2241 Male, age 72, unknown 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 939.0
2664 Male, age 75, both hemispheres 5295.0
2087 Female, age 72, unknown 1940.2
1913 Female, age 42, unknown 1245.8
1839 Male, age 51, unknown 909.2
1796 Male, age 53, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 2310.7
2218 Male, age 76, both hemispheres 8798.5
2223 Female, age 72, unknown 3963.9
1942 Male, age 51, unknown 1101.7
1915 Female, age 42, unknown 0.0
2021 Male, age 53, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15126.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15126.6
Samples: 139

Max nTPM: 87110.6
Min nTPM: 2137.0
Std nTPM: 13550.8
Median nTPM: 10226.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 87110.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 69762.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 61432.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50309.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 49082.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 43543.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 41769.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 40411.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39794.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 38571.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38213.5
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MIDBRAIN - Pig RNA-seqi
Average nTPM 4706.9
Pig sample Sample description nTPM
Midbrain
nTPM: 4706.9
Samples: 4

Max nTPM: 6538.8
Min nTPM: 2404.7
Sample A Female 4717.5
Sample B Female 6538.8
Sample C Male 5166.6
Sample D Male 2404.7
Periaqueductal gray
nTPM: 3755.3
Samples: 3

Max nTPM: 4358.0
Min nTPM: 2824.0
Sample B Female 4358.0
Sample C Male 4083.9
Sample D Male 2824.0
Substantia nigra
nTPM: 4605.6
Samples: 4

Max nTPM: 7171.5
Min nTPM: 2223.4
Sample A Female 7171.5
Sample B Female 4004.8
Sample C Male 5022.7
Sample D Male 2223.4
Superior colliculi
nTPM: 3676.4
Samples: 4

Max nTPM: 5648.3
Min nTPM: 503.9
Sample A Female 5648.3
Sample B Female 503.9
Sample C Male 4964.9
Sample D Male 3588.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.9
Samples: 4

Max nTPM: 112.6
Min nTPM: 88.9
Sample A Male 112.6
Sample B Male 111.2
Sample C Female 91.0
Sample D Female 88.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.