BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.3 nTPM
HPA:52.3 nTPM
GTEx:40.3 nTPM
FANTOM5:111.4 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:44.9 nTPM
Allen mouse:4.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024076
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.3
2289 Male, age 61, right hemisphere 37.6
2288 Male, age 75, left hemisphere 36.4
1781 Male, age 74, unknown 35.5
2846 Female, age 79, unknown 35.2
2290 Female, age 72, unknown 32.5
1854 Male, age 80, left hemisphere 30.3
1857 Female, age 85, left hemisphere 30.1
2481 Female, age 94, left hemisphere 29.1
Claustrum
nTPM: 47.6
2645 Female, age 72, unknown 55.0
2568 Male, age 61, both hemispheres 54.0
2292 Female, age 85, both hemispheres 53.1
2198 Male, age 80, both hemispheres 48.3
2284 Female, age 91, both hemispheres 47.3
1956 Male, age 74, unknown 46.0
2491 Male, age 75, both hemispheres 45.2
2196 Female, age 79, unknown 42.9
2392 Female, age 94, both hemispheres 36.4
Globus pallidus, externus
nTPM: 52.3
2646 Male, age 61, right hemisphere 57.7
2567 Female, age 72, unknown 56.2
2772 Female, age 79, unknown 53.5
1996 Male, age 80, right hemisphere 51.4
2395 Male, age 75, both hemispheres 42.8
Globus pallidus, internus
nTPM: 50.4
2111 Female, age 85, right hemisphere 59.2
2287 Male, age 75, right hemisphere 56.1
2566 Female, age 72, unknown 55.6
2778 Female, age 91, both hemispheres 50.1
1818 Male, age 74, unknown 48.5
2037 Male, age 80, right hemisphere 44.5
2483 Female, age 94, right hemisphere 38.9
Nucleus accumbens
nTPM: 33.9
2286 Male, age 75, left hemisphere 37.1
2824 Male, age 61, right hemisphere 36.7
2698 Female, age 72, unknown 35.8
1806 Female, age 85, left hemisphere 35.4
2732 Male, age 80, right hemisphere 34.5
2391 Female, age 94, left hemisphere 33.2
1783 Male, age 74, unknown 31.5
1856 Female, age 91, right hemisphere 27.4
Nucleus basalis of Meynert
nTPM: 39.6
2569 Male, age 61, both hemispheres 58.3
2821 Male, age 75, both hemispheres 36.3
2484 Female, age 94, left hemisphere 34.1
2393 Male, age 80, right hemisphere 29.8
Nucleus of the diagonal band
nTPM: 44.2
2029 Male, age 61, right hemisphere 48.7
2195 Female, age 85, both hemispheres 47.9
2775 Male, age 80, right hemisphere 45.7
1812 Female, age 91, both hemispheres 41.3
1979 Male, age 74, unknown 37.5
Olfactory tubercle
nTPM: 44.8
2856 Male, age 75, right hemisphere 47.7
2487 Female, age 94, left hemisphere 44.9
1998 Female, age 91, both hemispheres 43.5
1846 Male, age 80, right hemisphere 43.0
Putamen
nTPM: 35.8
2647 Male, age 75, left hemisphere 46.8
1829 Male, age 74, unknown 36.9
2489 Female, age 72, unknown 36.3
2466 Female, age 79, unknown 35.9
2482 Female, age 94, left hemisphere 34.1
1937 Female, age 91, right hemisphere 30.7
1838 Male, age 80, right hemisphere 29.8
Septal nuclei
nTPM: 44.6
1960 Male, age 74, unknown 51.2
2394 Male, age 61, left hemisphere 49.5
2059 Female, age 85, both hemispheres 48.1
2031 Female, age 72, unknown 43.7
2629 Female, age 94, right hemisphere 42.5
2199 Male, age 80, right hemisphere 40.4
2009 Female, age 91, both hemispheres 36.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.2
Samples: 246

Max nTPM: 63.7
Min nTPM: 17.2
Std nTPM: 7.3
Median nTPM: 35.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 63.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 58.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 56.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 56.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 55.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 52.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 52.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 51.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 50.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 49.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 48.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 69.5
Min nTPM: 13.8
Std nTPM: 8.2
Median nTPM: 36.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 69.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 65.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 65.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 60.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 59.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 58.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 58.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 57.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 57.1
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 54.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 40.3
Samples: 205

Max nTPM: 70.8
Min nTPM: 21.2
Std nTPM: 7.8
Median nTPM: 39.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 70.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 65.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 62.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 62.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 61.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 58.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 54.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 54.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 53.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 53.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 52.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.0
FF:10164-103B2 76 years, female 63.0
Globus pallidus
Scaled Tags Per Million: 111.4
FF:10175-103C4 60 years, female 123.9
FF:10161-103A8 76 years, female 99.0
Nucleus accumbens
Scaled Tags Per Million: 111.4
FF:10037-101F1 23-56 years, mixed 111.4
Putamen
Scaled Tags Per Million: 82.0
FF:10176-103C5 60 years, female 82.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Caudate
nTPM: 24.4
Samples: 4

Max nTPM: 30.6
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 23.4
Sample C Male 30.6
Sample D Male 24.4
Putamen
nTPM: 26.3
Samples: 4

Max nTPM: 35.4
Min nTPM: 20.2
Sample A Female 22.5
Sample B Female 20.2
Sample C Male 26.9
Sample D Male 35.4
Septum
nTPM: 22.3
Samples: 4

Max nTPM: 29.0
Min nTPM: 18.3
Sample A Female 19.6
Sample B Female 18.3
Sample C Male 29.0
Sample D Male 22.4
Ventral pallidum
nTPM: 25.0
Samples: 4

Max nTPM: 37.7
Min nTPM: 17.9
Sample A Female 19.6
Sample B Female 17.9
Sample C Male 37.7
Sample D Male 24.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.5
Samples: 4

Max nTPM: 45.2
Min nTPM: 36.2
Sample A Male 41.1
Sample B Male 45.2
Sample C Female 36.2
Sample D Female 39.5
Septum
nTPM: 29.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 26.0
Sample A Male 36.2
Sample B Male 26.0
Sample C Female 29.6
Sample D Female 26.1
Ventral forebrain
nTPM: 44.9
Samples: 4

Max nTPM: 46.4
Min nTPM: 44.2
Sample A Male 46.4
Sample B Male 44.7
Sample C Female 44.4
Sample D Female 44.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.4
68745534 Antisense, RP_050210_02_B05, Mouse strain C57BL/6J (56 days, male) 3.4
Pallidum
Expression energy: 4.5
68745534 Antisense, RP_050210_02_B05, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

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