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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:176794.8 nTPM
HPA:176794.8 nTPM
Pig:90174.7 nTPM
Mouse:41988.2 nTPM
Allen mouse:27.8 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 176794.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 145271.1
2301 Female, age 85, both hemispheres 169982.8
1984 Male, age 76, both hemispheres 141397.5
2188 Female, age 91, both hemispheres 137935.2
2090 Male, age 80, both hemispheres 131769.0
Area postrema
nTPM: 157448.0
2799 Male, age 61, both hemispheres 175064.3
2306 Male, age 80, both hemispheres 159459.1
2054 Male, age 76, both hemispheres 137820.6
Cuneate nuclei
nTPM: 161934.0
2131 Male, age 76, both hemispheres 170687.5
2381 Male, age 80, both hemispheres 169120.2
2376 Male, age 61, both hemispheres 145994.4
Dorsal cochlear nucleus
nTPM: 158980.5
2378 Male, age 80, both hemispheres 183807.7
2802 Male, age 74, right hemisphere 179093.6
2058 Male, age 76, both hemispheres 152835.3
2187 Female, age 91, both hemispheres 140682.8
2370 Male, age 61, both hemispheres 138482.9
Dorsal medullary reticular nucleus
nTPM: 146878.3
2088 Male, age 76, both hemispheres 153022.5
2373 Male, age 61, both hemispheres 150150.8
2040 Female, age 85, both hemispheres 137461.6
Dorsal motor vagal complex
nTPM: 159953.8
2797 Male, age 61, both hemispheres 238009.3
2807 Female, age 85, both hemispheres 176039.0
2643 Male, age 74, both hemispheres 158013.1
2185 Male, age 76, both hemispheres 154743.6
2844 Male, age 55, unknown 144044.0
2133 Female, age 91, both hemispheres 139762.9
2813 Female, age 72, unknown 137791.9
2000 Male, age 74, unknown 131226.9
Dorsal tegmental nucleus
nTPM: 146186.8
2358 Male, age 61, both hemispheres 162094.8
1936 Male, age 76, left hemisphere 143844.8
2083 Male, age 80, both hemispheres 140433.2
2326 Male, age 74, both hemispheres 138374.2
Dorsolateral tegmental area
nTPM: 133425.6
2141 Male, age 76, both hemispheres 145621.4
2654 Male, age 80, both hemispheres 140627.6
2337 Male, age 61, both hemispheres 132422.5
2751 Female, age 85, both hemispheres 128492.3
2360 Male, age 74, both hemispheres 119964.2
Gigantocellular reticular nuclei, medullary
nTPM: 152414.3
2387 Female, age 91, both hemispheres 183975.3
2310 Male, age 80, both hemispheres 176059.7
2314 Male, age 61, both hemispheres 151137.7
2462 Male, age 74, both hemispheres 143339.0
2022 Male, age 76, right hemisphere 132525.7
1876 Female, age 85, both hemispheres 127448.3
Gigantocellular reticular nuclei, pars
nTPM: 160856.3
2330 Male, age 80, both hemispheres 189356.8
2706 Male, age 80, both hemispheres 185266.1
2084 Female, age 85, both hemispheres 145040.1
2336 Male, age 61, both hemispheres 144308.5
2168 Male, age 76, both hemispheres 140309.8
Inferior olive
nTPM: 151693.6
2628 Female, age 91, both hemispheres 185565.3
2379 Male, age 80, both hemispheres 164462.1
2085 Female, age 85, both hemispheres 140308.5
2178 Male, age 61, both hemispheres 139920.7
2563 Male, age 74, both hemispheres 128211.3
Kolliker-Fuse nucleus
nTPM: 142498.6
2793 Female, age 91, left hemisphere 164083.4
2163 Male, age 80, both hemispheres 143832.3
2315 Male, age 76, right hemisphere 119580.1
Lateral lemniscal nuclei
nTPM: 146155.4
2320 Female, age 91, left hemisphere 172635.6
2453 Male, age 74, right hemisphere 154284.7
2169 Male, age 76, both hemispheres 148764.4
2036 Male, age 80, both hemispheres 136292.8
2746 Female, age 85, left hemisphere 118799.3
Lateral medullary reticular nucleus
nTPM: 140633.5
2804 Female, age 91, both hemispheres 168410.7
2374 Male, age 61, both hemispheres 153028.0
2044 Male, age 76, both hemispheres 142285.4
2190 Female, age 85, both hemispheres 140715.3
2852 Male, age 80, both hemispheres 122169.8
2305 Male, age 74, both hemispheres 117191.9
Lateral parabrachial nucleus
nTPM: 130632.5
2790 Male, age 61, both hemispheres 144354.8
2792 Male, age 76, both hemispheres 130228.9
2139 Female, age 85, right hemisphere 125732.2
2013 Male, age 80, both hemispheres 122214.3
Lateral vestibular nucleus
nTPM: 153375.9
2184 Male, age 76, both hemispheres 158061.1
2311 Male, age 80, both hemispheres 148690.6
Locus coeruleus
nTPM: 145456.1
2720 Male, age 74, both hemispheres 176088.9
2162 Male, age 80, both hemispheres 161064.0
2317 Female, age 72, unknown 139164.1
1980 Male, age 76, both hemispheres 138004.4
2788 Male, age 74, unknown 137619.7
2014 Male, age 55, unknown 134532.8
2123 Female, age 91, both hemispheres 131718.5
Medial olivary nucleus
nTPM: 127550.9
2851 Male, age 80, both hemispheres 149188.6
2138 Female, age 91, both hemispheres 129106.3
1962 Male, age 76, both hemispheres 118366.4
1943 Male, age 61, both hemispheres 113542.2
Medial parabrachial nucleus
nTPM: 137086.3
2854 Male, age 80, both hemispheres 147827.3
2786 Male, age 76, both hemispheres 146090.3
2156 Male, age 61, both hemispheres 139737.0
2170 Female, age 91, both hemispheres 128663.4
2463 Female, age 85, right hemisphere 123113.4
Medial periolivary nuclei
nTPM: 142668.6
2458 Female, age 91, both hemispheres 169305.3
2171 Female, age 85, both hemispheres 144299.2
2063 Male, age 76, both hemispheres 141261.2
2791 Male, age 74, right hemisphere 129392.1
2081 Male, age 80, both hemispheres 129085.4
Medial vestibular nucleus
nTPM: 148757.6
2624 Male, age 61, both hemispheres 177942.1
2134 Male, age 76, both hemispheres 152730.2
2803 Female, age 91, both hemispheres 148726.6
2093 Male, age 80, both hemispheres 141307.4
2801 Male, age 74, both hemispheres 138359.6
2743 Female, age 85, both hemispheres 133479.7
Motor facial nucleus
nTPM: 164466.3
2795 Female, age 91, both hemispheres 228493.0
2327 Male, age 80, both hemispheres 186691.0
2697 Female, age 85, both hemispheres 163391.1
2062 Male, age 76, both hemispheres 142283.7
2126 Male, age 61, both hemispheres 135058.1
2365 Male, age 74, right hemisphere 130880.9
Motor hypoglossal nucleus
nTPM: 147654.0
2461 Male, age 61, both hemispheres 172420.3
2132 Female, age 85, both hemispheres 154982.5
2182 Male, age 80, both hemispheres 143957.2
2125 Female, age 91, both hemispheres 139107.7
2277 Male, age 76, both hemispheres 127802.0
Motor trigeminal nucleus
nTPM: 147491.3
2321 Female, age 91, both hemispheres 169688.3
2560 Male, age 74, both hemispheres 151099.2
2309 Male, age 76, both hemispheres 142084.6
2335 Male, age 61, both hemispheres 138883.0
2079 Male, age 80, both hemispheres 135701.7
Nuclei of the trapezoid body
nTPM: 148124.6
2368 Female, age 91, both hemispheres 178044.4
2166 Male, age 80, both hemispheres 151515.4
1983 Male, age 76, both hemispheres 141860.6
2735 Female, age 85, both hemispheres 135051.7
2159 Male, age 61, both hemispheres 134151.1
Nucleus ambiguus
nTPM: 121022.1
2071 Male, age 76, both hemispheres 125442.0
2096 Female, age 85, both hemispheres 116602.2
Nucleus cuneatus
nTPM: 176794.8
2805 Female, age 91, both hemispheres 242063.8
2562 Male, age 61, both hemispheres 173355.4
2808 Female, age 85, both hemispheres 169285.9
2100 Male, age 76, both hemispheres 162012.5
2380 Male, age 80, both hemispheres 158900.8
2564 Male, age 74, both hemispheres 155150.5
Nucleus gracilis
nTPM: 161010.3
2299 Female, age 85, both hemispheres 184299.6
2382 Male, age 80, both hemispheres 163378.2
2627 Male, age 74, both hemispheres 135353.0
Nucleus raphe magnus
nTPM: 150855.3
2459 Female, age 91, both hemispheres 172886.1
2328 Male, age 80, both hemispheres 169832.2
2172 Female, age 85, both hemispheres 154402.6
2455 Male, age 74, both hemispheres 140279.9
2051 Male, age 76, both hemispheres 138243.6
2160 Male, age 61, both hemispheres 129487.4
Nucleus raphe obscurus
nTPM: 129963.7
2800 Male, age 61, midline 138792.4
2845 Female, age 85, midline 134628.9
2142 Male, age 76, midline 116469.7
Nucleus raphe pallidus
nTPM: 123784.2
2183 Male, age 80, midline 134205.9
2145 Male, age 76, midline 123432.8
1924 Male, age 61, midline 113714.1
Nucleus tractus solitarii
nTPM: 146644.4
2191 Female, age 85, both hemispheres 157062.5
2307 Male, age 80, both hemispheres 155896.3
2656 Male, age 76, both hemispheres 140301.7
2144 Female, age 91, right hemisphere 133317.2
Paramedian reticular nucleus
nTPM: 137555.5
2313 Male, age 61, both hemispheres 152220.2
2050 Female, age 85, both hemispheres 137206.0
2052 Male, age 76, both hemispheres 133090.8
2057 Male, age 80, both hemispheres 127705.0
Parvicellular reticular nuclei
nTPM: 140268.0
2558 Male, age 74, both hemispheres 152320.1
2095 Male, age 76, both hemispheres 138604.7
2119 Male, age 80, both hemispheres 129879.1
Parvicellular reticular nuclei, medullary
nTPM: 142860.3
2181 Male, age 80, left hemisphere 148581.3
2091 Female, age 85, both hemispheres 144161.7
2189 Female, age 91, both hemispheres 135838.0
Peritrigeminal nucleus
nTPM: 134207.6
2136 Male, age 76, both hemispheres 145534.8
2179 Male, age 61, both hemispheres 130456.4
2067 Female, age 85, both hemispheres 126631.8
Pontine nuclei
nTPM: 132359.2
2319 Female, age 91, both hemispheres 149686.3
1968 Male, age 76, left hemisphere 134605.4
2115 Male, age 80, left hemisphere 134450.5
2787 Female, age 85, both hemispheres 133553.9
2454 Male, age 74, left hemisphere 132470.9
1863 Male, age 55, unknown 130956.6
2109 Female, age 72, unknown 123198.0
2727 Male, age 61, right hemisphere 119951.8
Pontine raphe nucleus
nTPM: 142346.2
2853 Male, age 76, midline 147820.5
2122 Female, age 85, midline 136871.9
Posteroventral cochlear nucleus
nTPM: 136627.5
2341 Male, age 80, both hemispheres 148663.7
2371 Male, age 61, both hemispheres 140296.1
2752 Female, age 85, both hemispheres 139838.6
2070 Male, age 76, both hemispheres 128838.3
2135 Female, age 91, both hemispheres 125500.8
Prepositus hypoglossal nucleus
nTPM: 148881.6
2855 Female, age 85, right hemisphere 154160.4
2086 Male, age 80, both hemispheres 143602.8
Principal sensory trigeminal nucleus
nTPM: 146330.4
2324 Male, age 76, both hemispheres 169789.9
2367 Female, age 91, left hemisphere 154357.2
2008 Male, age 80, left hemisphere 130719.6
2158 Male, age 61, both hemispheres 130454.7
Reticular pontine nucleus, caudal
nTPM: 152922.1
2332 Male, age 80, right hemisphere 180532.7
2457 Female, age 91, both hemispheres 162240.4
2559 Male, age 74, both hemispheres 134881.3
2092 Male, age 76, both hemispheres 134034.1
Reticular pontine nucleus, oral
nTPM: 136572.6
2366 Female, age 91, both hemispheres 163541.3
2167 Male, age 76, both hemispheres 142522.2
1939 Male, age 80, both hemispheres 128213.4
2012 Female, age 85, both hemispheres 126119.5
2361 Male, age 74, both hemispheres 122466.8
Reticulotegmental nucleus
nTPM: 168465.9
2322 Female, age 91, both hemispheres 178983.8
2333 Male, age 80, both hemispheres 177734.4
2452 Male, age 74, both hemispheres 160135.0
2325 Male, age 76, both hemispheres 157010.4
Spinal trigeminal nucleus, caudal
nTPM: 152423.3
2390 Female, age 91, both hemispheres 163187.5
2308 Male, age 80, both hemispheres 162060.0
2447 Male, age 76, both hemispheres 157654.7
2312 Male, age 61, both hemispheres 140308.8
2642 Male, age 74, both hemispheres 138905.3
Spinal trigeminal nucleus, interpolar
nTPM: 146909.8
2625 Male, age 61, both hemispheres 161472.6
2389 Female, age 91, both hemispheres 158547.3
2066 Male, age 76, right hemisphere 144515.5
2386 Female, age 85, both hemispheres 135340.3
2033 Male, age 80, both hemispheres 134673.4
Spinal trigeminal nucleus, oral
nTPM: 144901.3
2164 Male, age 80, both hemispheres 166586.8
1978 Male, age 76, both hemispheres 135199.0
2737 Female, age 85, both hemispheres 132918.0
Spinal vestibular nucleus
nTPM: 144412.4
2796 Male, age 61, both hemispheres 158292.3
2806 Female, age 85, both hemispheres 156198.3
2384 Male, age 74, both hemispheres 141190.2
2186 Female, age 91, both hemispheres 139647.4
2748 Male, age 76, both hemispheres 137048.5
2780 Male, age 80, both hemispheres 134097.8
Subcoeruleus area
nTPM: 137623.4
2451 Male, age 74, both hemispheres 146797.3
2323 Female, age 91, left hemisphere 141427.1
2089 Male, age 76, left hemisphere 137691.1
1958 Male, age 80, both hemispheres 134601.8
2369 Female, age 85, left hemisphere 127599.5
Superior olive
nTPM: 146595.4
2561 Female, age 91, both hemispheres 183498.9
2329 Male, age 80, right hemisphere 170681.9
2020 Male, age 76, both hemispheres 131443.1
1875 Female, age 85, both hemispheres 126796.9
2364 Male, age 74, right hemisphere 120556.3
Superior vestibular nucleus
nTPM: 128203.2
2061 Male, age 76, both hemispheres 133482.5
2015 Male, age 80, both hemispheres 129530.8
2383 Male, age 74, both hemispheres 121596.3
Ventral medullary reticular nucleus
nTPM: 145090.6
2372 Male, age 61, both hemispheres 154674.0
2060 Male, age 76, both hemispheres 135507.2
Ventral periolivary nuclei
nTPM: 150928.7
2794 Female, age 91, left hemisphere 178079.8
2165 Male, age 80, both hemispheres 154759.5
2130 Female, age 85, both hemispheres 141659.7
2023 Male, age 76, both hemispheres 129215.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 143199.7
2302 Female, age 91, both hemispheres 167490.0
2118 Male, age 80, both hemispheres 142699.6
1986 Male, age 76, both hemispheres 136181.7
2180 Male, age 61, both hemispheres 135492.5
2741 Female, age 85, both hemispheres 134134.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 153371.7
2456 Female, age 91, both hemispheres 177379.9
2359 Male, age 61, both hemispheres 166865.5
2161 Male, age 80, both hemispheres 151081.0
2840 Female, age 85, both hemispheres 149157.1
1959 Male, age 76, both hemispheres 138299.5
2449 Male, age 74, both hemispheres 137447.1

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 90174.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 69498.4
Samples: 4

Max nTPM: 86167.7
Min nTPM: 52819.8
Sample A Female 62889.9
Sample B Female 86167.7
Sample C Male 76116.2
Sample D Male 52819.8
Pons
nTPM: 90174.7
Samples: 4

Max nTPM: 98069.4
Min nTPM: 69987.1
Sample A Female 97329.3
Sample B Female 69987.1
Sample C Male 95313.1
Sample D Male 98069.4

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 41988.2
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 41988.3
Samples: 4

Max nTPM: 43575.3
Min nTPM: 40616.9
Sample A Male 40616.9
Sample B Male 42307.1
Sample C Female 41453.8
Sample D Female 43575.3

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 27.8
75043148 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 27.8
73927706 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 22.4
Pons
Expression energy: 26.0
75043148 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 26.0
73927706 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 21.2

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