MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:178.8 nTPM
HPA:178.8 nTPM
GTEx:236.8 nTPM
FANTOM5:49.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.5
1870 Female, age 42, unknown 186.5
2411 Female, age 72, unknown 179.4
1830 Male, age 51, unknown 176.5
1833 Male, age 53, unknown 175.8
2019 Male, age 18, unknown 174.8
2828 Female, age 72, unknown 169.6
1827 Male, age 72, unknown 168.9
2666 Male, age 74, left hemisphere 164.1
2586 Male, age 75, left hemisphere 160.7
2219 Male, age 76, both hemispheres 158.4
Dorsal raphe nucleus
nTPM: 175.2
2016 Female, age 72, unknown 182.3
2750 Male, age 76, both hemispheres 177.2
2298 Female, age 72, unknown 176.1
1828 Male, age 53, unknown 173.5
2047 Male, age 72, unknown 166.9
Inferior colliculus
nTPM: 173.3
2097 Female, age 72, unknown 175.3
1890 Male, age 53, unknown 173.6
1848 Female, age 42, unknown 173.0
2849 Male, age 72, unknown 171.1
Median raphe nucleus
nTPM: 172.9
2220 Male, age 76, midline 172.9
Pedunculopontine tegmental nucleus
nTPM: 176.8
2338 Male, age 61, both hemispheres 183.0
2334 Male, age 80, both hemispheres 174.0
1921 Female, age 85, both hemispheres 173.4
Periaquaductal grey, anterior
nTPM: 166.8
2502 Female, age 75, unknown 172.2
1795 Male, age 51, unknown 164.4
1947 Male, age 18, unknown 163.8
Periaquaductal grey, dorsal
nTPM: 177.8
2850 Male, age 76, both hemispheres 181.3
1840 Male, age 53, unknown 181.1
1831 Male, age 72, unknown 175.6
2464 Female, age 72, unknown 173.2
Periaquaductal grey, lateral
nTPM: 175.3
2140 Male, age 76, both hemispheres 181.1
2053 Male, age 18, unknown 176.6
2272 Male, age 74, both hemispheres 168.3
Pretectal area
nTPM: 170.5
2316 Male, age 76, right hemisphere 180.9
2273 Male, age 74, both hemispheres 175.8
2224 Female, age 72, unknown 174.6
1815 Male, age 53, unknown 173.2
2825 Male, age 18, unknown 172.5
2407 Male, age 75, both hemispheres 170.8
1817 Female, age 42, unknown 168.8
2667 Female, age 75, unknown 168.5
1816 Male, age 51, unknown 165.0
2007 Male, age 72, unknown 163.1
1944 Female, age 72, unknown 162.5
Red nucleus
nTPM: 178.8
1954 Female, age 42, unknown 185.0
1904 Male, age 53, unknown 184.9
1865 Male, age 51, unknown 183.6
2503 Female, age 72, unknown 183.5
1821 Female, age 72, unknown 183.4
2769 Male, age 72, unknown 182.5
2823 Male, age 76, right hemisphere 182.3
2227 Male, age 72, unknown 180.7
2785 Male, age 18, unknown 175.7
2725 Female, age 75, unknown 170.7
2588 Male, age 74, left hemisphere 168.7
2584 Male, age 75, left hemisphere 164.3
Substantia nigra
nTPM: 171.9
2409 Female, age 72, unknown 185.7
2590 Female, age 75, unknown 177.9
2241 Male, age 72, unknown 176.4
2699 Male, age 18, unknown 174.6
1851 Male, age 51, unknown 173.5
2665 Male, age 74, both hemispheres 170.7
1889 Female, age 72, unknown 169.9
2583 Male, age 75, right hemisphere 165.8
1916 Female, age 42, unknown 162.9
1941 Male, age 53, unknown 161.2
Superior colliculus
nTPM: 173.1
1995 Male, age 72, unknown 186.2
1913 Female, age 42, unknown 183.4
1895 Male, age 76, right hemisphere 174.2
2587 Male, age 74, left hemisphere 172.0
2664 Male, age 75, both hemispheres 170.5
1839 Male, age 51, unknown 170.2
2668 Female, age 75, unknown 169.8
2087 Female, age 72, unknown 169.4
2261 Male, age 18, unknown 167.7
1796 Male, age 53, unknown 167.2
Ventral tegmental area
nTPM: 173.2
2410 Female, age 72, unknown 177.2
2021 Male, age 53, unknown 175.2
2223 Female, age 72, unknown 173.8
1942 Male, age 51, unknown 171.9
1915 Female, age 42, unknown 171.4
2218 Male, age 76, both hemispheres 169.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 236.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 236.8
Samples: 139

Max nTPM: 539.5
Min nTPM: 78.9
Std nTPM: 84.0
Median nTPM: 222.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 539.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 517.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 500.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 455.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 433.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 417.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 402.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 396.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 394.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 376.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 371.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.2
FF:10158-103A5 76 years, female 49.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.