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MT-ND3
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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:89729.0 nTPM
HPA:89729.0 nTPM
Pig:20827.6 nTPM
Mouse:7015.5 nTPM
Allen mouse:0.2 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 89729.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 77639.8
2301 Female, age 85, both hemispheres 89685.2
2188 Female, age 91, both hemispheres 78108.9
1984 Male, age 76, both hemispheres 72075.4
2090 Male, age 80, both hemispheres 70689.6
Area postrema
nTPM: 85947.3
2799 Male, age 61, both hemispheres 89426.7
2306 Male, age 80, both hemispheres 88886.3
2054 Male, age 76, both hemispheres 79528.9
Cuneate nuclei
nTPM: 83841.6
2381 Male, age 80, both hemispheres 94083.4
2131 Male, age 76, both hemispheres 81106.5
2376 Male, age 61, both hemispheres 76334.8
Dorsal cochlear nucleus
nTPM: 78519.9
2378 Male, age 80, both hemispheres 86175.8
2802 Male, age 74, right hemisphere 81699.9
2187 Female, age 91, both hemispheres 76970.8
2370 Male, age 61, both hemispheres 74178.6
2058 Male, age 76, both hemispheres 73574.3
Dorsal medullary reticular nucleus
nTPM: 75031.3
2373 Male, age 61, both hemispheres 79108.3
2088 Male, age 76, both hemispheres 74970.0
2040 Female, age 85, both hemispheres 71015.5
Dorsal motor vagal complex
nTPM: 84753.8
2797 Male, age 61, both hemispheres 108098.1
2807 Female, age 85, both hemispheres 97531.4
2185 Male, age 76, both hemispheres 86407.5
2643 Male, age 74, both hemispheres 84649.4
2813 Female, age 72, unknown 82586.3
2844 Male, age 55, unknown 73758.8
2133 Female, age 91, both hemispheres 73169.5
2000 Male, age 74, unknown 71829.9
Dorsal tegmental nucleus
nTPM: 76867.0
2358 Male, age 61, both hemispheres 85282.9
1936 Male, age 76, left hemisphere 75651.6
2083 Male, age 80, both hemispheres 73818.9
2326 Male, age 74, both hemispheres 72714.6
Dorsolateral tegmental area
nTPM: 72388.1
2141 Male, age 76, both hemispheres 77441.5
2337 Male, age 61, both hemispheres 73898.9
2654 Male, age 80, both hemispheres 73390.3
2751 Female, age 85, both hemispheres 69139.3
2360 Male, age 74, both hemispheres 68070.6
Gigantocellular reticular nuclei, medullary
nTPM: 78328.9
2387 Female, age 91, both hemispheres 85403.8
2310 Male, age 80, both hemispheres 85297.0
2314 Male, age 61, both hemispheres 85255.0
2022 Male, age 76, right hemisphere 72783.9
2462 Male, age 74, both hemispheres 71871.9
1876 Female, age 85, both hemispheres 69362.1
Gigantocellular reticular nuclei, pars
nTPM: 86971.8
2330 Male, age 80, both hemispheres 102865.7
2706 Male, age 80, both hemispheres 102312.2
2336 Male, age 61, both hemispheres 80697.2
2168 Male, age 76, both hemispheres 75295.6
2084 Female, age 85, both hemispheres 73688.5
Inferior olive
nTPM: 84546.1
2628 Female, age 91, both hemispheres 108140.6
2379 Male, age 80, both hemispheres 87846.7
2178 Male, age 61, both hemispheres 77373.8
2085 Female, age 85, both hemispheres 77325.7
2563 Male, age 74, both hemispheres 72043.8
Kolliker-Fuse nucleus
nTPM: 78705.6
2793 Female, age 91, left hemisphere 90862.6
2163 Male, age 80, both hemispheres 77498.5
2315 Male, age 76, right hemisphere 67755.7
Lateral lemniscal nuclei
nTPM: 75126.2
2320 Female, age 91, left hemisphere 81101.2
2169 Male, age 76, both hemispheres 78990.6
2453 Male, age 74, right hemisphere 77678.7
2036 Male, age 80, both hemispheres 70716.0
2746 Female, age 85, left hemisphere 67144.3
Lateral medullary reticular nucleus
nTPM: 76898.0
2374 Male, age 61, both hemispheres 87634.8
2804 Female, age 91, both hemispheres 87291.7
2190 Female, age 85, both hemispheres 77407.7
2044 Male, age 76, both hemispheres 72537.9
2852 Male, age 80, both hemispheres 69089.2
2305 Male, age 74, both hemispheres 67426.7
Lateral parabrachial nucleus
nTPM: 72076.8
2792 Male, age 76, both hemispheres 76553.8
2790 Male, age 61, both hemispheres 73439.2
2139 Female, age 85, right hemisphere 69735.0
2013 Male, age 80, both hemispheres 68579.2
Lateral vestibular nucleus
nTPM: 85648.8
2184 Male, age 76, both hemispheres 89331.5
2311 Male, age 80, both hemispheres 81966.0
Locus coeruleus
nTPM: 75967.1
2720 Male, age 74, both hemispheres 90919.0
2162 Male, age 80, both hemispheres 79430.5
2788 Male, age 74, unknown 78085.6
2317 Female, age 72, unknown 72407.5
2014 Male, age 55, unknown 71087.8
1980 Male, age 76, both hemispheres 71075.3
2123 Female, age 91, both hemispheres 68764.2
Medial olivary nucleus
nTPM: 73425.9
2851 Male, age 80, both hemispheres 88524.9
2138 Female, age 91, both hemispheres 69704.5
1962 Male, age 76, both hemispheres 68095.6
1943 Male, age 61, both hemispheres 67378.4
Medial parabrachial nucleus
nTPM: 75645.3
2854 Male, age 80, both hemispheres 86708.7
2786 Male, age 76, both hemispheres 77776.0
2156 Male, age 61, both hemispheres 74994.4
2170 Female, age 91, both hemispheres 72373.6
2463 Female, age 85, right hemisphere 66374.0
Medial periolivary nuclei
nTPM: 74743.8
2458 Female, age 91, both hemispheres 88673.6
2171 Female, age 85, both hemispheres 77178.3
2063 Male, age 76, both hemispheres 69882.6
2081 Male, age 80, both hemispheres 69604.4
2791 Male, age 74, right hemisphere 68380.1
Medial vestibular nucleus
nTPM: 79868.2
2624 Male, age 61, both hemispheres 99272.4
2803 Female, age 91, both hemispheres 83388.9
2134 Male, age 76, both hemispheres 77327.5
2801 Male, age 74, both hemispheres 76309.0
2093 Male, age 80, both hemispheres 73162.5
2743 Female, age 85, both hemispheres 69749.0
Motor facial nucleus
nTPM: 84197.4
2795 Female, age 91, both hemispheres 101068.1
2697 Female, age 85, both hemispheres 100293.0
2327 Male, age 80, both hemispheres 92514.5
2365 Male, age 74, right hemisphere 71287.0
2062 Male, age 76, both hemispheres 70015.7
2126 Male, age 61, both hemispheres 70006.1
Motor hypoglossal nucleus
nTPM: 78327.4
2461 Male, age 61, both hemispheres 93986.6
2132 Female, age 85, both hemispheres 79521.7
2182 Male, age 80, both hemispheres 78467.3
2125 Female, age 91, both hemispheres 70802.9
2277 Male, age 76, both hemispheres 68858.6
Motor trigeminal nucleus
nTPM: 76400.4
2321 Female, age 91, both hemispheres 84603.1
2309 Male, age 76, both hemispheres 76308.6
2335 Male, age 61, both hemispheres 75607.5
2560 Male, age 74, both hemispheres 73855.3
2079 Male, age 80, both hemispheres 71627.4
Nuclei of the trapezoid body
nTPM: 74400.8
2368 Female, age 91, both hemispheres 82605.3
2166 Male, age 80, both hemispheres 77661.5
1983 Male, age 76, both hemispheres 72502.0
2159 Male, age 61, both hemispheres 69949.6
2735 Female, age 85, both hemispheres 69285.3
Nucleus ambiguus
nTPM: 67288.9
2071 Male, age 76, both hemispheres 67965.9
2096 Female, age 85, both hemispheres 66611.9
Nucleus cuneatus
nTPM: 89729.0
2805 Female, age 91, both hemispheres 118937.3
2808 Female, age 85, both hemispheres 94608.0
2562 Male, age 61, both hemispheres 85032.6
2380 Male, age 80, both hemispheres 84357.5
2100 Male, age 76, both hemispheres 79558.5
2564 Male, age 74, both hemispheres 75880.1
Nucleus gracilis
nTPM: 88155.9
2382 Male, age 80, both hemispheres 93947.1
2299 Female, age 85, both hemispheres 93582.4
2627 Male, age 74, both hemispheres 76938.2
Nucleus raphe magnus
nTPM: 78738.2
2328 Male, age 80, both hemispheres 86522.3
2172 Female, age 85, both hemispheres 83145.0
2459 Female, age 91, both hemispheres 82571.9
2051 Male, age 76, both hemispheres 75732.9
2455 Male, age 74, both hemispheres 73716.4
2160 Male, age 61, both hemispheres 70740.9
Nucleus raphe obscurus
nTPM: 72634.0
2845 Female, age 85, midline 76514.4
2800 Male, age 61, midline 74189.6
2142 Male, age 76, midline 67198.0
Nucleus raphe pallidus
nTPM: 70020.9
2183 Male, age 80, midline 73961.9
2145 Male, age 76, midline 69290.4
1924 Male, age 61, midline 66810.5
Nucleus tractus solitarii
nTPM: 77578.6
2191 Female, age 85, both hemispheres 85069.7
2307 Male, age 80, both hemispheres 81749.3
2656 Male, age 76, both hemispheres 73805.0
2144 Female, age 91, right hemisphere 69690.4
Paramedian reticular nucleus
nTPM: 73666.2
2052 Male, age 76, both hemispheres 75909.3
2313 Male, age 61, both hemispheres 75878.1
2050 Female, age 85, both hemispheres 74843.5
2057 Male, age 80, both hemispheres 68033.8
Parvicellular reticular nuclei
nTPM: 73078.5
2095 Male, age 76, both hemispheres 74752.4
2558 Male, age 74, both hemispheres 74664.9
2119 Male, age 80, both hemispheres 69818.0
Parvicellular reticular nuclei, medullary
nTPM: 77465.0
2181 Male, age 80, left hemisphere 83326.1
2189 Female, age 91, both hemispheres 75952.1
2091 Female, age 85, both hemispheres 73116.8
Peritrigeminal nucleus
nTPM: 70782.6
2136 Male, age 76, both hemispheres 73111.3
2179 Male, age 61, both hemispheres 70962.3
2067 Female, age 85, both hemispheres 68274.2
Pontine nuclei
nTPM: 70701.4
2319 Female, age 91, both hemispheres 77120.7
2787 Female, age 85, both hemispheres 72856.0
2454 Male, age 74, left hemisphere 71044.7
1863 Male, age 55, unknown 70802.4
2115 Male, age 80, left hemisphere 70129.3
1968 Male, age 76, left hemisphere 69860.5
2109 Female, age 72, unknown 67499.3
2727 Male, age 61, right hemisphere 66298.1
Pontine raphe nucleus
nTPM: 74360.1
2853 Male, age 76, midline 77798.1
2122 Female, age 85, midline 70922.2
Posteroventral cochlear nucleus
nTPM: 73447.0
2341 Male, age 80, both hemispheres 80507.5
2371 Male, age 61, both hemispheres 76024.0
2752 Female, age 85, both hemispheres 70763.8
2135 Female, age 91, both hemispheres 70678.1
2070 Male, age 76, both hemispheres 69261.9
Prepositus hypoglossal nucleus
nTPM: 75712.5
2855 Female, age 85, right hemisphere 79491.5
2086 Male, age 80, both hemispheres 71933.5
Principal sensory trigeminal nucleus
nTPM: 79778.4
2324 Male, age 76, both hemispheres 96142.6
2367 Female, age 91, left hemisphere 83891.9
2158 Male, age 61, both hemispheres 70006.1
2008 Male, age 80, left hemisphere 69072.8
Reticular pontine nucleus, caudal
nTPM: 80002.9
2332 Male, age 80, right hemisphere 88089.1
2457 Female, age 91, both hemispheres 87282.0
2559 Male, age 74, both hemispheres 73104.5
2092 Male, age 76, both hemispheres 71536.0
Reticular pontine nucleus, oral
nTPM: 75871.0
2366 Female, age 91, both hemispheres 90577.4
2167 Male, age 76, both hemispheres 79691.0
1939 Male, age 80, both hemispheres 71524.0
2361 Male, age 74, both hemispheres 68901.3
2012 Female, age 85, both hemispheres 68661.1
Reticulotegmental nucleus
nTPM: 85383.2
2322 Female, age 91, both hemispheres 92461.6
2333 Male, age 80, both hemispheres 87109.8
2325 Male, age 76, both hemispheres 83934.2
2452 Male, age 74, both hemispheres 78027.0
Spinal trigeminal nucleus, caudal
nTPM: 81126.8
2390 Female, age 91, both hemispheres 91629.5
2308 Male, age 80, both hemispheres 84465.3
2642 Male, age 74, both hemispheres 77859.5
2447 Male, age 76, both hemispheres 76476.1
2312 Male, age 61, both hemispheres 75203.5
Spinal trigeminal nucleus, interpolar
nTPM: 78977.9
2625 Male, age 61, both hemispheres 92464.8
2389 Female, age 91, both hemispheres 88677.4
2386 Female, age 85, both hemispheres 72184.1
2033 Male, age 80, both hemispheres 71160.6
2066 Male, age 76, right hemisphere 70402.4
Spinal trigeminal nucleus, oral
nTPM: 78442.2
2164 Male, age 80, both hemispheres 92186.0
1978 Male, age 76, both hemispheres 73165.9
2737 Female, age 85, both hemispheres 69974.8
Spinal vestibular nucleus
nTPM: 77537.2
2796 Male, age 61, both hemispheres 90178.8
2806 Female, age 85, both hemispheres 82770.5
2186 Female, age 91, both hemispheres 75825.6
2384 Male, age 74, both hemispheres 72526.6
2780 Male, age 80, both hemispheres 72071.5
2748 Male, age 76, both hemispheres 71850.2
Subcoeruleus area
nTPM: 73327.9
1958 Male, age 80, both hemispheres 75947.3
2323 Female, age 91, left hemisphere 75497.6
2451 Male, age 74, both hemispheres 73945.1
2089 Male, age 76, left hemisphere 71894.3
2369 Female, age 85, left hemisphere 69355.3
Superior olive
nTPM: 76297.9
2561 Female, age 91, both hemispheres 89922.4
2329 Male, age 80, right hemisphere 84347.3
2020 Male, age 76, both hemispheres 70318.9
1875 Female, age 85, both hemispheres 69058.6
2364 Male, age 74, right hemisphere 67842.1
Superior vestibular nucleus
nTPM: 70722.1
2383 Male, age 74, both hemispheres 70830.2
2015 Male, age 80, both hemispheres 70696.5
2061 Male, age 76, both hemispheres 70639.7
Ventral medullary reticular nucleus
nTPM: 74944.3
2372 Male, age 61, both hemispheres 78279.6
2060 Male, age 76, both hemispheres 71609.0
Ventral periolivary nuclei
nTPM: 76289.4
2794 Female, age 91, left hemisphere 84428.8
2165 Male, age 80, both hemispheres 81126.5
2130 Female, age 85, both hemispheres 71346.5
2023 Male, age 76, both hemispheres 68256.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 74113.7
2302 Female, age 91, both hemispheres 81268.5
2180 Male, age 61, both hemispheres 77355.9
2118 Male, age 80, both hemispheres 71765.2
1986 Male, age 76, both hemispheres 70136.3
2741 Female, age 85, both hemispheres 70042.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 79733.4
2840 Female, age 85, both hemispheres 89479.5
2456 Female, age 91, both hemispheres 82297.2
2161 Male, age 80, both hemispheres 78754.2
2359 Male, age 61, both hemispheres 78406.3
1959 Male, age 76, both hemispheres 75984.1
2449 Male, age 74, both hemispheres 73478.8

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20827.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 17697.2
Samples: 4

Max nTPM: 20004.3
Min nTPM: 13622.8
Sample A Female 20004.3
Sample B Female 17698.1
Sample C Male 19463.6
Sample D Male 13622.8
Pons
nTPM: 20827.6
Samples: 4

Max nTPM: 27721.5
Min nTPM: 12311.0
Sample A Female 20134.9
Sample B Female 12311.0
Sample C Male 23142.9
Sample D Male 27721.5

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7015.5
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 7015.5
Samples: 4

Max nTPM: 8619.6
Min nTPM: 5121.9
Sample A Male 6735.9
Sample B Male 5121.9
Sample C Female 8619.6
Sample D Female 7584.7

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.2
Pons
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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