MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA:46.9 nTPM
GTEx:51.5 nTPM
FANTOM5:188.2 Scaled Tags Per Million
Pig:87.9 nTPM
Mouse:188.7 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.0
2019 Male, age 18, unknown 49.1
1870 Female, age 42, unknown 48.0
2411 Female, age 72, unknown 46.8
1833 Male, age 53, unknown 43.9
1827 Male, age 72, unknown 43.7
1830 Male, age 51, unknown 43.7
2586 Male, age 75, left hemisphere 42.5
2666 Male, age 74, left hemisphere 40.7
2219 Male, age 76, both hemispheres 40.6
2828 Female, age 72, unknown 40.6
Dorsal raphe nucleus
nTPM: 46.7
2298 Female, age 72, unknown 51.6
2047 Male, age 72, unknown 47.3
2750 Male, age 76, both hemispheres 46.6
2016 Female, age 72, unknown 44.3
1828 Male, age 53, unknown 43.7
Inferior colliculus
nTPM: 42.8
2097 Female, age 72, unknown 47.6
1890 Male, age 53, unknown 42.6
1848 Female, age 42, unknown 42.4
2849 Male, age 72, unknown 38.7
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Pedunculopontine tegmental nucleus
nTPM: 45.6
2334 Male, age 80, both hemispheres 48.5
1921 Female, age 85, both hemispheres 45.7
2338 Male, age 61, both hemispheres 42.7
Periaquaductal grey, anterior
nTPM: 46.2
1947 Male, age 18, unknown 47.3
2502 Female, age 75, unknown 46.4
1795 Male, age 51, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 43.9
2850 Male, age 76, both hemispheres 47.4
2464 Female, age 72, unknown 44.7
1840 Male, age 53, unknown 42.9
1831 Male, age 72, unknown 40.6
Periaquaductal grey, lateral
nTPM: 43.8
2272 Male, age 74, both hemispheres 45.4
2140 Male, age 76, both hemispheres 43.5
2053 Male, age 18, unknown 42.5
Pretectal area
nTPM: 46.1
2007 Male, age 72, unknown 50.0
1817 Female, age 42, unknown 49.1
1815 Male, age 53, unknown 49.0
1816 Male, age 51, unknown 47.7
1944 Female, age 72, unknown 47.7
2224 Female, age 72, unknown 46.9
2667 Female, age 75, unknown 46.5
2273 Male, age 74, both hemispheres 46.4
2825 Male, age 18, unknown 43.2
2316 Male, age 76, right hemisphere 41.8
2407 Male, age 75, both hemispheres 39.1
Red nucleus
nTPM: 45.3
1821 Female, age 72, unknown 53.1
1904 Male, age 53, unknown 48.4
1954 Female, age 42, unknown 47.0
1865 Male, age 51, unknown 46.7
2785 Male, age 18, unknown 46.6
2503 Female, age 72, unknown 45.2
2725 Female, age 75, unknown 45.0
2769 Male, age 72, unknown 43.9
2227 Male, age 72, unknown 43.2
2823 Male, age 76, right hemisphere 41.8
2584 Male, age 75, left hemisphere 41.4
2588 Male, age 74, left hemisphere 41.3
Substantia nigra
nTPM: 45.2
2241 Male, age 72, unknown 50.6
1916 Female, age 42, unknown 48.2
1851 Male, age 51, unknown 47.0
2409 Female, age 72, unknown 46.7
1889 Female, age 72, unknown 46.3
2583 Male, age 75, right hemisphere 45.2
1941 Male, age 53, unknown 43.6
2590 Female, age 75, unknown 43.1
2699 Male, age 18, unknown 41.0
2665 Male, age 74, both hemispheres 40.4
Superior colliculus
nTPM: 42.6
1995 Male, age 72, unknown 44.5
1796 Male, age 53, unknown 44.2
1913 Female, age 42, unknown 44.2
2087 Female, age 72, unknown 43.8
2668 Female, age 75, unknown 43.7
2261 Male, age 18, unknown 43.4
1839 Male, age 51, unknown 42.1
1895 Male, age 76, right hemisphere 42.1
2587 Male, age 74, left hemisphere 41.3
2664 Male, age 75, both hemispheres 36.4
Ventral tegmental area
nTPM: 45.0
2410 Female, age 72, unknown 52.0
2223 Female, age 72, unknown 46.3
2218 Male, age 76, both hemispheres 44.2
1915 Female, age 42, unknown 43.6
2021 Male, age 53, unknown 42.3
1942 Male, age 51, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.5
Samples: 139

Max nTPM: 82.5
Min nTPM: 24.4
Std nTPM: 11.4
Median nTPM: 50.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 82.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 79.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 78.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 76.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 73.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 72.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 70.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 188.2
FF:10158-103A5 76 years, female 188.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.9
Pig sample Sample description nTPM
Midbrain
nTPM: 87.9
Samples: 4

Max nTPM: 100.9
Min nTPM: 79.5
Sample A Female 100.9
Sample B Female 82.3
Sample C Male 88.8
Sample D Male 79.5
Periaqueductal gray
nTPM: 70.4
Samples: 3

Max nTPM: 74.1
Min nTPM: 67.2
Sample B Female 67.2
Sample C Male 74.1
Sample D Male 70.0
Substantia nigra
nTPM: 83.3
Samples: 4

Max nTPM: 105.1
Min nTPM: 66.7
Sample A Female 105.1
Sample B Female 66.7
Sample C Male 90.8
Sample D Male 70.4
Superior colliculi
nTPM: 81.5
Samples: 4

Max nTPM: 94.7
Min nTPM: 61.0
Sample A Female 94.7
Sample B Female 61.0
Sample C Male 90.5
Sample D Male 79.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 188.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 188.7
Samples: 4

Max nTPM: 193.4
Min nTPM: 185.9
Sample A Male 185.9
Sample B Male 193.4
Sample C Female 189.7
Sample D Female 185.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68545935 Antisense, RP_050120_01_G04, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.