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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:111323.1 nTPM
HPA:111323.1 nTPM
Pig:40687.2 nTPM
Mouse:37703.7 nTPM
Allen mouse:20.5 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 111323.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 96037.3
2301 Female, age 85, both hemispheres 105114.6
2188 Female, age 91, both hemispheres 94490.8
1984 Male, age 76, both hemispheres 94169.0
2090 Male, age 80, both hemispheres 90374.9
Area postrema
nTPM: 104168.3
2799 Male, age 61, both hemispheres 110972.1
2306 Male, age 80, both hemispheres 103938.9
2054 Male, age 76, both hemispheres 97593.8
Cuneate nuclei
nTPM: 103857.7
2381 Male, age 80, both hemispheres 109626.0
2131 Male, age 76, both hemispheres 107923.6
2376 Male, age 61, both hemispheres 94023.6
Dorsal cochlear nucleus
nTPM: 100203.4
2378 Male, age 80, both hemispheres 109032.7
2802 Male, age 74, right hemisphere 108799.8
2058 Male, age 76, both hemispheres 97152.3
2187 Female, age 91, both hemispheres 93199.6
2370 Male, age 61, both hemispheres 92832.6
Dorsal medullary reticular nucleus
nTPM: 96446.8
2088 Male, age 76, both hemispheres 98677.0
2373 Male, age 61, both hemispheres 97983.5
2040 Female, age 85, both hemispheres 92679.9
Dorsal motor vagal complex
nTPM: 104926.4
2797 Male, age 61, both hemispheres 135603.6
2807 Female, age 85, both hemispheres 113867.9
2643 Male, age 74, both hemispheres 106631.5
2185 Male, age 76, both hemispheres 102116.9
2813 Female, age 72, unknown 98272.8
2844 Male, age 55, unknown 95966.3
2133 Female, age 91, both hemispheres 95186.3
2000 Male, age 74, unknown 91765.6
Dorsal tegmental nucleus
nTPM: 96963.3
2358 Male, age 61, both hemispheres 105906.7
1936 Male, age 76, left hemisphere 95643.3
2083 Male, age 80, both hemispheres 94305.1
2326 Male, age 74, both hemispheres 91998.1
Dorsolateral tegmental area
nTPM: 91577.3
2141 Male, age 76, both hemispheres 99206.0
2654 Male, age 80, both hemispheres 93187.4
2337 Male, age 61, both hemispheres 92480.4
2751 Female, age 85, both hemispheres 87591.9
2360 Male, age 74, both hemispheres 85421.1
Gigantocellular reticular nuclei, medullary
nTPM: 97653.5
2387 Female, age 91, both hemispheres 108443.7
2310 Male, age 80, both hemispheres 106984.5
2314 Male, age 61, both hemispheres 97837.1
2462 Male, age 74, both hemispheres 93978.2
2022 Male, age 76, right hemisphere 90486.1
1876 Female, age 85, both hemispheres 88191.3
Gigantocellular reticular nuclei, pars
nTPM: 103616.9
2330 Male, age 80, both hemispheres 116582.8
2706 Male, age 80, both hemispheres 115535.8
2084 Female, age 85, both hemispheres 97057.2
2336 Male, age 61, both hemispheres 95647.7
2168 Male, age 76, both hemispheres 93261.0
Inferior olive
nTPM: 98891.0
2628 Female, age 91, both hemispheres 118232.0
2379 Male, age 80, both hemispheres 99802.5
2085 Female, age 85, both hemispheres 94360.7
2178 Male, age 61, both hemispheres 94083.5
2563 Male, age 74, both hemispheres 87976.4
Kolliker-Fuse nucleus
nTPM: 96412.2
2793 Female, age 91, left hemisphere 108101.8
2163 Male, age 80, both hemispheres 96191.9
2315 Male, age 76, right hemisphere 84942.9
Lateral lemniscal nuclei
nTPM: 95443.3
2320 Female, age 91, left hemisphere 103881.2
2453 Male, age 74, right hemisphere 101553.7
2169 Male, age 76, both hemispheres 95898.3
2036 Male, age 80, both hemispheres 91260.8
2746 Female, age 85, left hemisphere 84622.6
Lateral medullary reticular nucleus
nTPM: 94189.4
2804 Female, age 91, both hemispheres 105760.2
2374 Male, age 61, both hemispheres 101129.0
2044 Male, age 76, both hemispheres 94196.2
2190 Female, age 85, both hemispheres 93806.3
2852 Male, age 80, both hemispheres 86408.9
2305 Male, age 74, both hemispheres 83836.1
Lateral parabrachial nucleus
nTPM: 89956.3
2790 Male, age 61, both hemispheres 95509.0
2792 Male, age 76, both hemispheres 89454.0
2139 Female, age 85, right hemisphere 88609.3
2013 Male, age 80, both hemispheres 86252.7
Lateral vestibular nucleus
nTPM: 99810.0
2184 Male, age 76, both hemispheres 102692.2
2311 Male, age 80, both hemispheres 96927.8
Locus coeruleus
nTPM: 101079.3
2720 Male, age 74, both hemispheres 120979.2
2162 Male, age 80, both hemispheres 107205.9
2788 Male, age 74, unknown 99490.5
2317 Female, age 72, unknown 96121.8
1980 Male, age 76, both hemispheres 95984.4
2014 Male, age 55, unknown 95913.9
2123 Female, age 91, both hemispheres 91859.1
Medial olivary nucleus
nTPM: 89287.6
2851 Male, age 80, both hemispheres 100752.6
2138 Female, age 91, both hemispheres 88171.1
1962 Male, age 76, both hemispheres 84407.4
1943 Male, age 61, both hemispheres 83819.4
Medial parabrachial nucleus
nTPM: 93153.8
2854 Male, age 80, both hemispheres 99373.3
2786 Male, age 76, both hemispheres 97567.9
2156 Male, age 61, both hemispheres 95200.3
2170 Female, age 91, both hemispheres 88254.2
2463 Female, age 85, right hemisphere 85373.1
Medial periolivary nuclei
nTPM: 95050.1
2458 Female, age 91, both hemispheres 108250.9
2171 Female, age 85, both hemispheres 97335.9
2063 Male, age 76, both hemispheres 92119.1
2791 Male, age 74, right hemisphere 88839.4
2081 Male, age 80, both hemispheres 88705.4
Medial vestibular nucleus
nTPM: 98253.1
2624 Male, age 61, both hemispheres 110065.3
2134 Male, age 76, both hemispheres 100715.3
2803 Female, age 91, both hemispheres 99829.1
2801 Male, age 74, both hemispheres 94765.3
2093 Male, age 80, both hemispheres 94536.4
2743 Female, age 85, both hemispheres 89607.0
Motor facial nucleus
nTPM: 106050.0
2795 Female, age 91, both hemispheres 134307.4
2327 Male, age 80, both hemispheres 114952.7
2697 Female, age 85, both hemispheres 112723.7
2062 Male, age 76, both hemispheres 92300.9
2365 Male, age 74, right hemisphere 91165.4
2126 Male, age 61, both hemispheres 90849.6
Motor hypoglossal nucleus
nTPM: 97780.7
2461 Male, age 61, both hemispheres 108194.1
2132 Female, age 85, both hemispheres 102759.3
2182 Male, age 80, both hemispheres 95443.5
2125 Female, age 91, both hemispheres 93389.2
2277 Male, age 76, both hemispheres 89117.3
Motor trigeminal nucleus
nTPM: 95873.0
2321 Female, age 91, both hemispheres 102986.3
2560 Male, age 74, both hemispheres 96254.3
2309 Male, age 76, both hemispheres 94433.4
2335 Male, age 61, both hemispheres 93517.1
2079 Male, age 80, both hemispheres 92173.7
Nuclei of the trapezoid body
nTPM: 96492.0
2368 Female, age 91, both hemispheres 106990.2
2166 Male, age 80, both hemispheres 98088.8
1983 Male, age 76, both hemispheres 96027.9
2735 Female, age 85, both hemispheres 90923.4
2159 Male, age 61, both hemispheres 90429.8
Nucleus ambiguus
nTPM: 86018.9
2071 Male, age 76, both hemispheres 87136.4
2096 Female, age 85, both hemispheres 84901.4
Nucleus cuneatus
nTPM: 111323.1
2805 Female, age 91, both hemispheres 143180.7
2808 Female, age 85, both hemispheres 111774.8
2562 Male, age 61, both hemispheres 105778.1
2100 Male, age 76, both hemispheres 105754.8
2380 Male, age 80, both hemispheres 102969.9
2564 Male, age 74, both hemispheres 98480.3
Nucleus gracilis
nTPM: 105135.6
2299 Female, age 85, both hemispheres 114123.1
2382 Male, age 80, both hemispheres 106851.3
2627 Male, age 74, both hemispheres 94432.4
Nucleus raphe magnus
nTPM: 99277.6
2328 Male, age 80, both hemispheres 106785.2
2172 Female, age 85, both hemispheres 104563.4
2459 Female, age 91, both hemispheres 104532.0
2051 Male, age 76, both hemispheres 95318.3
2455 Male, age 74, both hemispheres 94706.2
2160 Male, age 61, both hemispheres 89760.2
Nucleus raphe obscurus
nTPM: 90004.2
2845 Female, age 85, midline 93322.6
2800 Male, age 61, midline 93034.6
2142 Male, age 76, midline 83655.4
Nucleus raphe pallidus
nTPM: 88256.1
2183 Male, age 80, midline 92692.4
2145 Male, age 76, midline 88579.1
1924 Male, age 61, midline 83496.6
Nucleus tractus solitarii
nTPM: 97556.0
2191 Female, age 85, both hemispheres 103282.6
2307 Male, age 80, both hemispheres 100887.7
2656 Male, age 76, both hemispheres 94072.4
2144 Female, age 91, right hemisphere 91981.4
Paramedian reticular nucleus
nTPM: 93472.7
2313 Male, age 61, both hemispheres 98371.4
2050 Female, age 85, both hemispheres 94437.3
2052 Male, age 76, both hemispheres 93066.3
2057 Male, age 80, both hemispheres 88015.6
Parvicellular reticular nuclei
nTPM: 93584.8
2558 Male, age 74, both hemispheres 98032.6
2095 Male, age 76, both hemispheres 93245.9
2119 Male, age 80, both hemispheres 89475.9
Parvicellular reticular nuclei, medullary
nTPM: 96124.4
2181 Male, age 80, left hemisphere 99665.9
2091 Female, age 85, both hemispheres 95114.4
2189 Female, age 91, both hemispheres 93592.9
Peritrigeminal nucleus
nTPM: 90979.5
2136 Male, age 76, both hemispheres 95421.3
2179 Male, age 61, both hemispheres 89360.2
2067 Female, age 85, both hemispheres 88156.9
Pontine nuclei
nTPM: 90623.6
2319 Female, age 91, both hemispheres 96558.5
2787 Female, age 85, both hemispheres 94216.4
2115 Male, age 80, left hemisphere 91339.0
1863 Male, age 55, unknown 91127.1
1968 Male, age 76, left hemisphere 90156.2
2454 Male, age 74, left hemisphere 90085.1
2109 Female, age 72, unknown 86472.9
2727 Male, age 61, right hemisphere 85033.5
Pontine raphe nucleus
nTPM: 95349.1
2853 Male, age 76, midline 98221.2
2122 Female, age 85, midline 92477.0
Posteroventral cochlear nucleus
nTPM: 91839.7
2341 Male, age 80, both hemispheres 97548.8
2371 Male, age 61, both hemispheres 93624.8
2752 Female, age 85, both hemispheres 92049.2
2070 Male, age 76, both hemispheres 88927.2
2135 Female, age 91, both hemispheres 87048.7
Prepositus hypoglossal nucleus
nTPM: 97932.5
2855 Female, age 85, right hemisphere 100997.7
2086 Male, age 80, both hemispheres 94867.2
Principal sensory trigeminal nucleus
nTPM: 96908.2
2324 Male, age 76, both hemispheres 107648.4
2367 Female, age 91, left hemisphere 101870.1
2008 Male, age 80, left hemisphere 89325.4
2158 Male, age 61, both hemispheres 88788.8
Reticular pontine nucleus, caudal
nTPM: 99542.5
2332 Male, age 80, right hemisphere 109872.8
2457 Female, age 91, both hemispheres 105192.6
2092 Male, age 76, both hemispheres 91736.1
2559 Male, age 74, both hemispheres 91368.6
Reticular pontine nucleus, oral
nTPM: 93338.8
2366 Female, age 91, both hemispheres 107672.1
2167 Male, age 76, both hemispheres 95832.5
1939 Male, age 80, both hemispheres 89105.4
2012 Female, age 85, both hemispheres 87321.5
2361 Male, age 74, both hemispheres 86762.6
Reticulotegmental nucleus
nTPM: 104523.8
2322 Female, age 91, both hemispheres 109811.3
2333 Male, age 80, both hemispheres 107902.5
2325 Male, age 76, both hemispheres 101180.2
2452 Male, age 74, both hemispheres 99201.3
Spinal trigeminal nucleus, caudal
nTPM: 99859.0
2390 Female, age 91, both hemispheres 106823.3
2308 Male, age 80, both hemispheres 103178.7
2447 Male, age 76, both hemispheres 100120.4
2642 Male, age 74, both hemispheres 96147.4
2312 Male, age 61, both hemispheres 93025.2
Spinal trigeminal nucleus, interpolar
nTPM: 97031.7
2389 Female, age 91, both hemispheres 104392.1
2625 Male, age 61, both hemispheres 103663.9
2066 Male, age 76, right hemisphere 94286.8
2386 Female, age 85, both hemispheres 91444.8
2033 Male, age 80, both hemispheres 91371.0
Spinal trigeminal nucleus, oral
nTPM: 96728.1
2164 Male, age 80, both hemispheres 107787.9
1978 Male, age 76, both hemispheres 92896.0
2737 Female, age 85, both hemispheres 89500.3
Spinal vestibular nucleus
nTPM: 96360.3
2796 Male, age 61, both hemispheres 104034.0
2806 Female, age 85, both hemispheres 102276.4
2186 Female, age 91, both hemispheres 94570.5
2384 Male, age 74, both hemispheres 93482.6
2748 Male, age 76, both hemispheres 92375.4
2780 Male, age 80, both hemispheres 91423.2
Subcoeruleus area
nTPM: 92290.6
2451 Male, age 74, both hemispheres 95206.3
2323 Female, age 91, left hemisphere 94619.9
1958 Male, age 80, both hemispheres 93735.4
2089 Male, age 76, left hemisphere 91159.1
2369 Female, age 85, left hemisphere 86732.2
Superior olive
nTPM: 95835.3
2561 Female, age 91, both hemispheres 110846.8
2329 Male, age 80, right hemisphere 105882.9
1875 Female, age 85, both hemispheres 88478.5
2020 Male, age 76, both hemispheres 88432.3
2364 Male, age 74, right hemisphere 85535.7
Superior vestibular nucleus
nTPM: 89062.2
2061 Male, age 76, both hemispheres 90206.4
2015 Male, age 80, both hemispheres 89495.4
2383 Male, age 74, both hemispheres 87484.6
Ventral medullary reticular nucleus
nTPM: 94294.0
2372 Male, age 61, both hemispheres 97048.2
2060 Male, age 76, both hemispheres 91539.8
Ventral periolivary nuclei
nTPM: 98585.2
2794 Female, age 91, left hemisphere 109197.7
2165 Male, age 80, both hemispheres 102852.7
2130 Female, age 85, both hemispheres 94366.9
2023 Male, age 76, both hemispheres 87923.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 94362.1
2302 Female, age 91, both hemispheres 102037.2
2118 Male, age 80, both hemispheres 93652.2
2180 Male, age 61, both hemispheres 92998.4
1986 Male, age 76, both hemispheres 92077.2
2741 Female, age 85, both hemispheres 91045.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 100152.1
2456 Female, age 91, both hemispheres 105289.4
2359 Male, age 61, both hemispheres 104871.3
2840 Female, age 85, both hemispheres 103051.2
2161 Male, age 80, both hemispheres 99351.6
1959 Male, age 76, both hemispheres 94393.8
2449 Male, age 74, both hemispheres 93955.2

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40687.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 35789.9
Samples: 4

Max nTPM: 39399.3
Min nTPM: 30523.0
Sample A Female 34831.7
Sample B Female 39399.3
Sample C Male 38405.6
Sample D Male 30523.0
Pons
nTPM: 40687.2
Samples: 4

Max nTPM: 51104.7
Min nTPM: 31162.0
Sample A Female 43575.5
Sample B Female 31162.0
Sample C Male 36906.7
Sample D Male 51104.7

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37703.7
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 37703.7
Samples: 4

Max nTPM: 40546.4
Min nTPM: 35457.8
Sample A Male 35457.8
Sample B Male 36887.1
Sample C Female 37923.4
Sample D Female 40546.4

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.5
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 22.1
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 19.0
Pons
Expression energy: 19.8
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 20.6
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 18.9

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