HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.5 nTPM
HPA:60.5 nTPM
GTEx:66.7 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:27.0 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 60.5
Sample id Sample description nTPM
Hippocampus
nTPM: 59.5
1898 Male, age 80, left hemisphere 61.9
2529 Female, age 94, left hemisphere 61.2
1911 Female, age 85, right hemisphere 61.0
1855 Male, age 76, left hemisphere 60.1
2148 Female, age 91, left hemisphere 56.9
2621 Female, age 67, right hemisphere 56.0
Dentate gyrus
nTPM: 60.2
2010 Male, age 76, both hemispheres 63.6
2530 Female, age 94, left hemisphere 63.0
2528 Male, age 74, both hemispheres 61.2
2246 Female, age 85, both hemispheres 59.0
1927 Female, age 91, both hemispheres 58.1
2531 Female, age 67, both hemispheres 56.5
Entorhinal gyrus
nTPM: 57.2
1938 Female, age 85, left hemisphere 59.2
2117 Female, age 91, right hemisphere 59.0
1787 Male, age 76, left hemisphere 58.6
2764 Male, age 80, right hemisphere 58.0
2686 Male, age 75, right hemisphere 56.1
2613 Female, age 94, left hemisphere 52.3
Hippocampus, CA1
nTPM: 60.3
2082 Female, age 91, right hemisphere 61.3
1873 Female, age 85, both hemispheres 61.0
2749 Male, age 80, left hemisphere 60.2
2045 Male, age 76, both hemispheres 59.5
2527 Male, age 74, both hemispheres 59.4
Hippocampus, CA2
nTPM: 60.2
2249 Male, age 74, both hemispheres 63.9
1963 Male, age 80, left hemisphere 62.1
1940 Female, age 85, left hemisphere 60.1
1892 Male, age 76, both hemispheres 59.1
2113 Female, age 91, right hemisphere 58.5
2437 Female, age 94, left hemisphere 57.7
Hippocampus, CA3
nTPM: 57.8
1891 Female, age 85, both hemispheres 59.9
1867 Male, age 76, both hemispheres 59.1
2137 Male, age 80, left hemisphere 59.0
2436 Male, age 74, both hemispheres 58.8
2620 Female, age 94, left hemisphere 56.3
2861 Female, age 67, both hemispheres 53.7
Parahippocampal cortex
nTPM: 57.4
2018 Male, age 76, both hemispheres 62.1
1850 Male, age 80, both hemispheres 59.8
1933 Female, age 85, both hemispheres 58.5
2245 Female, age 91, both hemispheres 58.1
2532 Female, age 72, left hemisphere 57.8
1990 Female, age 91, right hemisphere 57.6
2692 Male, age 74, both hemispheres 57.4
2250 Female, age 67, right hemisphere 55.4
2622 Female, age 67, right hemisphere 54.8
2693 Female, age 94, both hemispheres 52.0
Perirhinal gyrus
nTPM: 59.5
1847 Female, age 91, left hemisphere 63.0
1794 Male, age 80, right hemisphere 62.3
1841 Female, age 85, right hemisphere 59.1
2848 Male, age 76, right hemisphere 57.2
2521 Female, age 94, right hemisphere 55.7
Subiculum
nTPM: 60.5
2438 Female, age 94, left hemisphere 62.6
1977 Female, age 85, both hemispheres 61.3
2042 Male, age 76, both hemispheres 60.7
1901 Male, age 80, both hemispheres 60.5
2729 Female, age 91, right hemisphere 59.8
2619 Male, age 74, both hemispheres 57.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.7
Samples: 197

Max nTPM: 197.9
Min nTPM: 28.1
Std nTPM: 19.0
Median nTPM: 63.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 197.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 139.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 129.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 122.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 116.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 111.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 102.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 97.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 97.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 95.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 94.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.8
FF:10169-103B7 60 years, female 82.6
FF:10153-102I9 76 years, female 57.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.2
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.4
Sample A Female 2.9
Sample B Female 1.4
Sample C Male 2.7
Sample D Male 1.6
Entorhinal cortex
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.6
Sample A Female 1.1
Sample B Female 1.0
Sample C Male 1.9
Sample D Male 0.6
Subiculum
nTPM: 1.8
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.1
Sample A Female 2.5
Sample B Female 1.6
Sample C Male 1.1
Sample D Male 1.8
Ventral hippocampus
nTPM: 2.0
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.7
Sample A Female 2.3
Sample B Female 1.7
Sample C Male 2.2
Sample D Male 1.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.0
Samples: 4

Max nTPM: 30.2
Min nTPM: 24.4
Sample A Male 26.1
Sample B Male 30.2
Sample C Female 24.4
Sample D Female 27.4
Hippocampal formation
nTPM: 25.5
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.0
Sample A Male 32.1
Sample B Male 20.0
Sample C Female 21.8
Sample D Female 28.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71919505 Antisense, RP_051012_02_E09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.