MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.7 nTPM
HPA:69.7 nTPM
GTEx:92.9 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:4.0 nTPM
Mouse:26.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.0
2411 Female, age 72, unknown 70.3
1870 Female, age 42, unknown 67.9
1833 Male, age 53, unknown 64.8
2019 Male, age 18, unknown 64.1
2219 Male, age 76, both hemispheres 63.9
2828 Female, age 72, unknown 63.7
1830 Male, age 51, unknown 62.4
2586 Male, age 75, left hemisphere 62.3
1827 Male, age 72, unknown 62.2
2666 Male, age 74, left hemisphere 58.0
Dorsal raphe nucleus
nTPM: 67.4
2298 Female, age 72, unknown 71.5
2016 Female, age 72, unknown 69.5
1828 Male, age 53, unknown 67.3
2750 Male, age 76, both hemispheres 65.8
2047 Male, age 72, unknown 63.0
Inferior colliculus
nTPM: 62.1
2097 Female, age 72, unknown 63.7
1890 Male, age 53, unknown 61.7
2849 Male, age 72, unknown 61.6
1848 Female, age 42, unknown 61.4
Median raphe nucleus
nTPM: 63.5
2220 Male, age 76, midline 63.5
Pedunculopontine tegmental nucleus
nTPM: 65.2
2334 Male, age 80, both hemispheres 67.2
2338 Male, age 61, both hemispheres 65.6
1921 Female, age 85, both hemispheres 62.8
Periaquaductal grey, anterior
nTPM: 65.0
2502 Female, age 75, unknown 66.1
1947 Male, age 18, unknown 64.5
1795 Male, age 51, unknown 64.3
Periaquaductal grey, dorsal
nTPM: 66.7
2850 Male, age 76, both hemispheres 70.5
1840 Male, age 53, unknown 69.8
2464 Female, age 72, unknown 64.7
1831 Male, age 72, unknown 61.8
Periaquaductal grey, lateral
nTPM: 68.0
2272 Male, age 74, both hemispheres 68.8
2140 Male, age 76, both hemispheres 68.3
2053 Male, age 18, unknown 67.1
Pretectal area
nTPM: 63.9
2273 Male, age 74, both hemispheres 71.6
2224 Female, age 72, unknown 67.1
2825 Male, age 18, unknown 66.0
1815 Male, age 53, unknown 64.2
2316 Male, age 76, right hemisphere 64.2
1816 Male, age 51, unknown 62.6
1817 Female, age 42, unknown 62.5
2007 Male, age 72, unknown 61.9
2667 Female, age 75, unknown 61.8
1944 Female, age 72, unknown 61.6
2407 Male, age 75, both hemispheres 59.4
Red nucleus
nTPM: 66.4
1821 Female, age 72, unknown 71.9
2503 Female, age 72, unknown 69.6
2227 Male, age 72, unknown 69.1
1865 Male, age 51, unknown 67.7
1904 Male, age 53, unknown 67.7
1954 Female, age 42, unknown 67.6
2725 Female, age 75, unknown 66.2
2769 Male, age 72, unknown 65.6
2823 Male, age 76, right hemisphere 64.9
2588 Male, age 74, left hemisphere 64.8
2785 Male, age 18, unknown 62.3
2584 Male, age 75, left hemisphere 59.0
Substantia nigra
nTPM: 69.7
2241 Male, age 72, unknown 79.0
1916 Female, age 42, unknown 77.4
1851 Male, age 51, unknown 76.9
2699 Male, age 18, unknown 75.7
1941 Male, age 53, unknown 67.8
2590 Female, age 75, unknown 66.9
2409 Female, age 72, unknown 65.6
1889 Female, age 72, unknown 64.2
2583 Male, age 75, right hemisphere 62.4
2665 Male, age 74, both hemispheres 61.5
Superior colliculus
nTPM: 63.5
2587 Male, age 74, left hemisphere 68.2
1995 Male, age 72, unknown 67.3
2668 Female, age 75, unknown 66.2
1913 Female, age 42, unknown 65.7
1796 Male, age 53, unknown 62.7
1895 Male, age 76, right hemisphere 62.1
1839 Male, age 51, unknown 61.6
2261 Male, age 18, unknown 61.1
2087 Female, age 72, unknown 60.8
2664 Male, age 75, both hemispheres 59.2
Ventral tegmental area
nTPM: 68.6
2410 Female, age 72, unknown 73.5
1915 Female, age 42, unknown 72.1
2218 Male, age 76, both hemispheres 69.3
2223 Female, age 72, unknown 66.3
1942 Male, age 51, unknown 66.0
2021 Male, age 53, unknown 64.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.9
Samples: 139

Max nTPM: 215.4
Min nTPM: 48.5
Std nTPM: 24.0
Median nTPM: 88.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 215.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 180.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 156.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 144.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 142.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 141.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 135.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 133.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 133.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 128.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.9
FF:10158-103A5 76 years, female 80.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.0
Pig sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.7
Sample A Female 3.4
Sample B Female 1.9
Sample C Male 1.0
Sample D Male 0.7
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 5.3
Min nTPM: 2.9
Sample B Female 2.9
Sample C Male 5.3
Sample D Male 3.8
Substantia nigra
nTPM: 1.7
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.7
Sample A Female 2.6
Sample B Female 1.9
Sample C Male 1.5
Sample D Male 0.7
Superior colliculi
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.8
Sample A Female 1.5
Sample B Female 0.8
Sample C Male 1.5
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 30.2
Min nTPM: 22.9
Sample A Male 25.4
Sample B Male 26.9
Sample C Female 22.9
Sample D Female 30.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71919505 Antisense, RP_051012_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.