MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA:12.9 nTPM
GTEx:38.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:70.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.7
2019 Male, age 18, unknown 14.1
1870 Female, age 42, unknown 8.2
2586 Male, age 75, left hemisphere 7.1
2666 Male, age 74, left hemisphere 6.9
1827 Male, age 72, unknown 6.8
1830 Male, age 51, unknown 6.8
1833 Male, age 53, unknown 6.8
2219 Male, age 76, both hemispheres 6.8
2411 Female, age 72, unknown 6.8
2828 Female, age 72, unknown 6.8
Dorsal raphe nucleus
nTPM: 11.6
2016 Female, age 72, unknown 21.7
2298 Female, age 72, unknown 12.9
2750 Male, age 76, both hemispheres 9.8
1828 Male, age 53, unknown 6.8
2047 Male, age 72, unknown 6.8
Inferior colliculus
nTPM: 6.8
1848 Female, age 42, unknown 6.8
1890 Male, age 53, unknown 6.8
2097 Female, age 72, unknown 6.8
2849 Male, age 72, unknown 6.8
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 7.0
2338 Male, age 61, both hemispheres 7.3
1921 Female, age 85, both hemispheres 6.9
2334 Male, age 80, both hemispheres 6.9
Periaquaductal grey, anterior
nTPM: 7.5
1947 Male, age 18, unknown 8.3
2502 Female, age 75, unknown 7.4
1795 Male, age 51, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 12.9
1840 Male, age 53, unknown 18.6
1831 Male, age 72, unknown 14.7
2850 Male, age 76, both hemispheres 11.5
2464 Female, age 72, unknown 6.8
Periaquaductal grey, lateral
nTPM: 10.6
2272 Male, age 74, both hemispheres 13.2
2140 Male, age 76, both hemispheres 11.9
2053 Male, age 18, unknown 6.8
Pretectal area
nTPM: 7.7
2224 Female, age 72, unknown 14.6
1816 Male, age 51, unknown 8.5
2667 Female, age 75, unknown 7.4
2407 Male, age 75, both hemispheres 7.1
2273 Male, age 74, both hemispheres 6.9
1815 Male, age 53, unknown 6.8
1817 Female, age 42, unknown 6.8
1944 Female, age 72, unknown 6.8
2007 Male, age 72, unknown 6.8
2316 Male, age 76, right hemisphere 6.8
2825 Male, age 18, unknown 6.8
Red nucleus
nTPM: 6.9
2823 Male, age 76, right hemisphere 7.7
2725 Female, age 75, unknown 7.4
2584 Male, age 75, left hemisphere 7.1
2588 Male, age 74, left hemisphere 6.9
1821 Female, age 72, unknown 6.8
1865 Male, age 51, unknown 6.8
1904 Male, age 53, unknown 6.8
1954 Female, age 42, unknown 6.8
2227 Male, age 72, unknown 6.8
2503 Female, age 72, unknown 6.8
2769 Male, age 72, unknown 6.8
2785 Male, age 18, unknown 6.8
Substantia nigra
nTPM: 10.5
2409 Female, age 72, unknown 23.1
2241 Male, age 72, unknown 12.7
1941 Male, age 53, unknown 12.0
1916 Female, age 42, unknown 11.5
2699 Male, age 18, unknown 9.7
1851 Male, age 51, unknown 7.8
2590 Female, age 75, unknown 7.4
2583 Male, age 75, right hemisphere 7.1
2665 Male, age 74, both hemispheres 6.9
1889 Female, age 72, unknown 6.8
Superior colliculus
nTPM: 9.1
1913 Female, age 42, unknown 15.0
1995 Male, age 72, unknown 14.1
1796 Male, age 53, unknown 10.4
2087 Female, age 72, unknown 9.6
2668 Female, age 75, unknown 7.4
2664 Male, age 75, both hemispheres 7.1
2587 Male, age 74, left hemisphere 6.9
1839 Male, age 51, unknown 6.8
1895 Male, age 76, right hemisphere 6.8
2261 Male, age 18, unknown 6.8
Ventral tegmental area
nTPM: 10.6
2410 Female, age 72, unknown 17.8
1942 Male, age 51, unknown 13.8
1915 Female, age 42, unknown 10.8
2218 Male, age 76, both hemispheres 7.2
2021 Male, age 53, unknown 7.1
2223 Female, age 72, unknown 6.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 139

Max nTPM: 160.8
Min nTPM: 0.2
Std nTPM: 26.6
Median nTPM: 30.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 160.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 138.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 124.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 124.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 116.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 98.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 95.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 95.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 81.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 80.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.8
Pig sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 83.7
Min nTPM: 49.1
Sample A Female 83.7
Sample B Female 52.9
Sample C Male 49.1
Sample D Male 52.8
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 58.3
Min nTPM: 43.5
Sample B Female 43.5
Sample C Male 58.3
Sample D Male 45.2
Substantia nigra
nTPM: 57.0
Samples: 4

Max nTPM: 78.5
Min nTPM: 42.4
Sample A Female 78.5
Sample B Female 60.1
Sample C Male 46.8
Sample D Male 42.4
Superior colliculi
nTPM: 70.8
Samples: 4

Max nTPM: 90.1
Min nTPM: 53.1
Sample A Female 90.1
Sample B Female 84.7
Sample C Male 55.4
Sample D Male 53.1

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