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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:351.5 nTPM
HPA:351.5 nTPM
GTEx:323.2 nTPM
FANTOM5:344.9 Scaled Tags Per Million
Pig:313.7 nTPM
Mouse:400.4 nTPM
Allen mouse:28.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 351.5
Sample id Sample description nTPM
Amygdala
nTPM: 299.4
2814 Male, age 76, right hemisphere 329.4
2695 Female, age 67, right hemisphere 298.1
1987 Female, age 91, left hemisphere 296.3
2514 Male, age 75, right hemisphere 294.7
2517 Female, age 94, left hemisphere 278.7
Basal amygdala
nTPM: 304.7
2685 Female, age 94, left hemisphere 333.0
2243 Female, age 91, right hemisphere 326.2
2110 Male, age 80, left hemisphere 311.6
2609 Male, age 75, right hemisphere 305.3
1955 Male, age 76, both hemispheres 302.6
2827 Female, age 67, right hemisphere 249.6
Central amygdala
nTPM: 298.8
2239 Male, age 80, left hemisphere 310.5
2826 Female, age 94, left hemisphere 302.8
1905 Male, age 76, both hemispheres 302.0
2701 Female, age 91, right hemisphere 299.4
2515 Male, age 75, right hemisphere 279.1
Corticomedial amygdala
nTPM: 305.9
2829 Male, age 80, left hemisphere 349.4
2242 Female, age 91, right hemisphere 321.1
2429 Female, age 94, left hemisphere 311.2
2240 Male, age 76, both hemispheres 296.4
2428 Male, age 75, right hemisphere 285.4
2535 Female, age 67, right hemisphere 272.2
Lateral amygdala
nTPM: 289.0
1883 Male, age 76, both hemispheres 328.8
2534 Female, age 94, left hemisphere 314.6
2516 Male, age 75, right hemisphere 286.2
2256 Male, age 80, left hemisphere 284.3
2255 Female, age 91, right hemisphere 280.3
2830 Female, age 67, right hemisphere 240.0
Stria terminalis, bed nucleus
nTPM: 351.5
1974 Female, age 91, both hemispheres 400.1
2486 Female, age 94, both hemispheres 350.7
2201 Male, age 74, unknown 303.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 323.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 323.2
Samples: 152

Max nTPM: 617.7
Min nTPM: 102.7
Std nTPM: 76.6
Median nTPM: 317.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 617.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 505.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 493.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 491.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 484.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 475.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 475.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 447.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 442.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 441.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 441.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 438.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 438.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 437.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 433.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 430.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 429.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 428.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 422.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 421.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 420.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 411.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 408.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 402.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 402.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 401.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 393.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 390.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 386.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 382.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 381.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 380.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 375.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 375.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 373.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 368.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 368.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 366.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 365.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 363.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 361.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 357.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 353.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 350.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 349.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 349.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 349.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 349.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 349.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 348.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 348.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 346.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 346.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 344.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 343.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 342.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 335.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 334.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 332.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 332.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 331.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 328.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 328.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 328.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 328.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 327.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 327.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 327.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 327.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 323.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 322.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 322.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 320.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 320.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 319.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 317.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 316.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 315.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 314.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 313.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 310.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 309.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 307.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 306.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 305.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 305.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 304.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 303.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 302.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 300.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 300.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 299.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 297.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 297.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 296.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 296.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 295.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 295.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 294.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 293.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 291.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 291.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 285.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 285.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 282.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 281.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 280.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 278.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 278.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 277.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 277.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 277.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 273.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 271.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 269.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 269.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 264.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 263.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 263.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 262.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 261.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 260.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 260.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 259.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 259.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 257.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 254.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 254.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 252.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 249.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 244.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 244.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 242.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 241.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 238.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 235.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 233.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 232.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 228.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 227.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 221.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 215.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 212.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 208.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 199.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 185.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 183.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 182.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 181.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 102.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 344.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 344.9
FF:10151-102I7 76 years, female 344.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 313.7
Pig sample Sample description nTPM
Amygdala
nTPM: 313.7
Samples: 4

Max nTPM: 463.4
Min nTPM: 224.8
Sample A Female 463.4
Sample B Female 224.8
Sample C Male 262.6
Sample D Male 304.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.4
Samples: 4

Max nTPM: 454.8
Min nTPM: 359.1
Sample A Male 454.8
Sample B Male 398.5
Sample C Female 359.1
Sample D Female 389.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 28.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.9
74357589 Antisense, RP_060117_01_A05, Mouse strain C57BL/6J (56 days, male) 28.9

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