MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:312.7 nTPM
HPA:312.7 nTPM
GTEx:281.1 nTPM
FANTOM5:244.3 Scaled Tags Per Million
Pig:416.5 nTPM
Mouse:432.3 nTPM
Allen mouse:21.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 312.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 294.7
1827 Male, age 72, unknown 320.7
2666 Male, age 74, left hemisphere 312.7
2411 Female, age 72, unknown 303.3
1870 Female, age 42, unknown 297.8
2828 Female, age 72, unknown 293.0
2219 Male, age 76, both hemispheres 288.6
2586 Male, age 75, left hemisphere 287.3
2019 Male, age 18, unknown 286.0
1833 Male, age 53, unknown 285.5
1830 Male, age 51, unknown 271.8
Dorsal raphe nucleus
nTPM: 283.4
2298 Female, age 72, unknown 296.1
2750 Male, age 76, both hemispheres 294.4
2047 Male, age 72, unknown 293.4
1828 Male, age 53, unknown 279.1
2016 Female, age 72, unknown 254.0
Inferior colliculus
nTPM: 287.5
2849 Male, age 72, unknown 302.1
1848 Female, age 42, unknown 285.9
2097 Female, age 72, unknown 285.8
1890 Male, age 53, unknown 276.3
Median raphe nucleus
nTPM: 312.7
2220 Male, age 76, midline 312.7
Pedunculopontine tegmental nucleus
nTPM: 303.8
1921 Female, age 85, both hemispheres 308.9
2334 Male, age 80, both hemispheres 306.2
2338 Male, age 61, both hemispheres 296.3
Periaquaductal grey, anterior
nTPM: 285.4
1947 Male, age 18, unknown 298.5
1795 Male, age 51, unknown 291.9
2502 Female, age 75, unknown 265.9
Periaquaductal grey, dorsal
nTPM: 278.8
1840 Male, age 53, unknown 288.8
1831 Male, age 72, unknown 283.8
2850 Male, age 76, both hemispheres 283.3
2464 Female, age 72, unknown 259.4
Periaquaductal grey, lateral
nTPM: 268.5
2053 Male, age 18, unknown 279.3
2272 Male, age 74, both hemispheres 269.4
2140 Male, age 76, both hemispheres 256.9
Pretectal area
nTPM: 306.3
1817 Female, age 42, unknown 342.9
1816 Male, age 51, unknown 337.6
2007 Male, age 72, unknown 330.3
1944 Female, age 72, unknown 329.4
1815 Male, age 53, unknown 316.6
2667 Female, age 75, unknown 312.5
2407 Male, age 75, both hemispheres 296.5
2224 Female, age 72, unknown 293.4
2825 Male, age 18, unknown 285.6
2273 Male, age 74, both hemispheres 274.3
2316 Male, age 76, right hemisphere 250.3
Red nucleus
nTPM: 278.9
1821 Female, age 72, unknown 297.4
2584 Male, age 75, left hemisphere 290.9
2785 Male, age 18, unknown 290.6
2588 Male, age 74, left hemisphere 290.5
2725 Female, age 75, unknown 285.8
1865 Male, age 51, unknown 277.3
2503 Female, age 72, unknown 273.2
1954 Female, age 42, unknown 270.9
2769 Male, age 72, unknown 270.2
1904 Male, age 53, unknown 268.6
2823 Male, age 76, right hemisphere 268.4
2227 Male, age 72, unknown 263.5
Substantia nigra
nTPM: 289.3
1889 Female, age 72, unknown 320.2
1941 Male, age 53, unknown 315.6
1916 Female, age 42, unknown 314.0
1851 Male, age 51, unknown 295.8
2583 Male, age 75, right hemisphere 294.2
2665 Male, age 74, both hemispheres 279.0
2590 Female, age 75, unknown 278.6
2699 Male, age 18, unknown 273.9
2241 Male, age 72, unknown 263.8
2409 Female, age 72, unknown 257.7
Superior colliculus
nTPM: 289.8
2668 Female, age 75, unknown 305.3
1796 Male, age 53, unknown 301.1
2087 Female, age 72, unknown 297.8
1895 Male, age 76, right hemisphere 292.4
2587 Male, age 74, left hemisphere 292.0
2261 Male, age 18, unknown 291.8
1839 Male, age 51, unknown 285.1
1913 Female, age 42, unknown 283.7
2664 Male, age 75, both hemispheres 282.3
1995 Male, age 72, unknown 266.1
Ventral tegmental area
nTPM: 294.1
2218 Male, age 76, both hemispheres 310.4
2410 Female, age 72, unknown 302.0
1915 Female, age 42, unknown 301.4
2223 Female, age 72, unknown 301.0
1942 Male, age 51, unknown 279.6
2021 Male, age 53, unknown 270.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 281.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 281.1
Samples: 139

Max nTPM: 612.0
Min nTPM: 176.9
Std nTPM: 65.7
Median nTPM: 271.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 612.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 499.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 457.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 430.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 418.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 391.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 390.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 384.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 383.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 382.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 380.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 244.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 244.3
FF:10158-103A5 76 years, female 244.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 416.5
Pig sample Sample description nTPM
Midbrain
nTPM: 416.6
Samples: 4

Max nTPM: 535.4
Min nTPM: 273.5
Sample A Female 448.3
Sample B Female 273.5
Sample C Male 535.4
Sample D Male 409.1
Periaqueductal gray
nTPM: 286.2
Samples: 3

Max nTPM: 335.4
Min nTPM: 257.3
Sample B Female 257.3
Sample C Male 335.4
Sample D Male 265.9
Substantia nigra
nTPM: 330.2
Samples: 4

Max nTPM: 406.7
Min nTPM: 241.8
Sample A Female 406.7
Sample B Female 241.8
Sample C Male 393.3
Sample D Male 279.0
Superior colliculi
nTPM: 397.3
Samples: 4

Max nTPM: 482.1
Min nTPM: 258.0
Sample A Female 426.1
Sample B Female 258.0
Sample C Male 482.1
Sample D Male 423.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 432.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 432.4
Samples: 4

Max nTPM: 442.0
Min nTPM: 418.6
Sample A Male 418.6
Sample B Male 442.0
Sample C Female 439.1
Sample D Female 429.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
74357589 Antisense, RP_060117_01_A05, Mouse strain C57BL/6J (56 days, male) 21.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.