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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:311.4 nTPM
HPA:311.4 nTPM
GTEx:317.3 nTPM
FANTOM5:197.9 Scaled Tags Per Million
Pig:343.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 311.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 293.7
2565 Male, age 75, midline 308.7
2194 Female, age 79, both hemispheres 301.9
1981 Female, age 72, midline 300.1
2816 Male, age 47, midline 289.3
2048 Male, age 55, midline 268.4
Cervical spinal cord, dorsal horn
nTPM: 311.4
2296 Male, age 66, both hemispheres 360.9
2069 Male, age 47, both hemispheres 308.5
1877 Male, age 55, unknown 306.4
2173 Female, age 72, unknown 304.8
2297 Male, age 75, both hemispheres 298.6
2721 Male, age 90, both hemispheres 289.2
Cervical spinal cord, ventral horn
nTPM: 284.6
2820 Female, age 79, both hemispheres 300.7
2098 Female, age 72, unknown 297.1
2068 Male, age 55, unknown 293.0
2480 Male, age 75, both hemispheres 277.6
2295 Male, age 66, both hemispheres 271.9
2809 Male, age 90, both hemispheres 267.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 317.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 317.3
Samples: 159

Max nTPM: 453.2
Min nTPM: 189.6
Std nTPM: 51.4
Median nTPM: 325.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 453.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 444.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 429.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 423.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 422.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 421.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 415.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 413.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 401.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 392.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 392.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 389.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 388.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 384.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 382.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 378.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 375.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 374.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 372.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 371.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 365.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 365.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 364.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 363.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 363.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 362.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 361.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 361.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 356.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 356.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 356.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 354.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 353.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 352.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 352.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 351.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 351.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 349.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 349.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 349.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 348.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 348.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 348.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 346.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 345.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 344.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 343.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 342.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 341.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 341.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 341.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 341.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 340.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 338.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 338.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 338.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 338.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 337.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 337.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 337.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 337.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 333.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 333.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 333.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 332.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 332.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 332.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 332.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 331.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 329.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 328.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 328.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 327.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 327.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 327.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 326.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 325.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 325.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 325.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 325.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 320.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 320.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 318.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 318.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 317.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 317.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 316.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 315.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 314.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 313.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 310.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 309.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 309.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 309.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 308.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 308.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 307.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 307.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 304.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 304.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 302.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 301.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 299.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 298.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 297.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 297.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 296.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 294.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 292.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 291.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 291.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 290.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 289.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 288.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 288.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 287.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 285.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 285.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 285.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 284.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 283.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 282.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 281.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 281.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 281.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 277.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 277.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 277.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 276.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 275.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 272.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 272.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 272.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 269.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 263.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 262.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 259.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 258.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 256.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 256.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 252.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 249.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 247.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 246.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 246.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 240.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 238.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 234.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 233.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 228.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 225.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 223.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 220.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 218.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 210.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 209.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 199.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 192.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 189.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 197.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 197.9
FF:10181-103D1 60 years, female 198.8
FF:10159-103A6 76 years, female 197.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 343.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 313.9
Samples: 4

Max nTPM: 369.8
Min nTPM: 252.0
Sample A Female 369.8
Sample B Female 273.7
Sample C Male 252.0
Sample D Male 359.9
Ventral spinal cord
nTPM: 343.1
Samples: 4

Max nTPM: 356.5
Min nTPM: 329.9
Sample A Female 355.8
Sample B Female 330.0
Sample C Male 329.9
Sample D Male 356.5

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