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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:106.4 nTPM
FANTOM5:139.5 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:36.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Amygdala
nTPM: 24.1
2695 Female, age 67, right hemisphere 44.8
2814 Male, age 76, right hemisphere 27.3
1987 Female, age 91, left hemisphere 17.7
2517 Female, age 94, left hemisphere 16.5
2514 Male, age 75, right hemisphere 14.0
Basal amygdala
nTPM: 14.6
2609 Male, age 75, right hemisphere 26.7
2685 Female, age 94, left hemisphere 14.2
1955 Male, age 76, both hemispheres 13.0
2243 Female, age 91, right hemisphere 12.7
2827 Female, age 67, right hemisphere 12.4
2110 Male, age 80, left hemisphere 8.2
Central amygdala
nTPM: 21.0
2515 Male, age 75, right hemisphere 27.7
1905 Male, age 76, both hemispheres 23.5
2701 Female, age 91, right hemisphere 20.1
2826 Female, age 94, left hemisphere 20.0
2239 Male, age 80, left hemisphere 13.7
Corticomedial amygdala
nTPM: 10.1
2242 Female, age 91, right hemisphere 18.3
2829 Male, age 80, left hemisphere 12.9
2428 Male, age 75, right hemisphere 9.3
2535 Female, age 67, right hemisphere 8.5
2240 Male, age 76, both hemispheres 6.5
2429 Female, age 94, left hemisphere 5.2
Lateral amygdala
nTPM: 17.6
2256 Male, age 80, left hemisphere 21.8
1883 Male, age 76, both hemispheres 20.4
2516 Male, age 75, right hemisphere 18.8
2255 Female, age 91, right hemisphere 18.1
2830 Female, age 67, right hemisphere 16.3
2534 Female, age 94, left hemisphere 10.4
Stria terminalis, bed nucleus
nTPM: 5.9
2201 Male, age 74, unknown 16.3
1974 Female, age 91, both hemispheres 1.4
2486 Female, age 94, both hemispheres 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 106.4
Samples: 152

Max nTPM: 274.5
Min nTPM: 15.5
Std nTPM: 35.9
Median nTPM: 105.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 274.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 236.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 222.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 211.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 181.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 170.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 166.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 165.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 160.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 159.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 158.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 154.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 150.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 149.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 146.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 144.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 140.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 138.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 137.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 133.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 132.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 132.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 132.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 128.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 125.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 124.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 122.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 122.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 122.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 118.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 118.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 117.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 116.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 116.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 115.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 114.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 112.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 111.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 110.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 110.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 110.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 109.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 109.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 108.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 107.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 106.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 106.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 105.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 104.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 102.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 102.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 101.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 100.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 96.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 96.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 93.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 93.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 92.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 91.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 91.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 88.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 88.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 87.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 83.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 83.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 82.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 82.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 81.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 81.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 80.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 80.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 78.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 78.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 77.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 77.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 74.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 73.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 73.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 73.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 70.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 69.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 68.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 66.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 65.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 62.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 62.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 61.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 59.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 56.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 54.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 54.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 52.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.5
FF:10151-102I7 76 years, female 139.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.1
Pig sample Sample description nTPM
Amygdala
nTPM: 53.1
Samples: 4

Max nTPM: 58.1
Min nTPM: 47.4
Sample A Female 58.1
Sample B Female 47.4
Sample C Male 49.9
Sample D Male 56.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 36.9
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.6
Sample A Male 37.7
Sample B Male 33.6
Sample C Female 41.2
Sample D Female 35.1

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